Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1865 ATGAGGAGGACAAATGGTGATTCAAATGGCCAAAATCAAATCCCTAAAGTTGGAGGCAGAGTAGCATCTGTTTTGCCAAAACAGACTACAAATGATGCTCTATACTATTTGAATGAAGTTAAAGACACATTTCATGACCAAAGTGAAAAATATGACATGTTCCTTGCAATTATGAAAGATTTCAGGGCTCATAGGATTGACACTGCTTGTGTTGTATCAAAAGTGAAGGAGCTATTCAAAGGGCATGACAATTTGATTTCTGGTTTCAATGCTTTCTTGCCAATGGAATTTGAGATAACACCAGATAAAGATGAAGAAACTCTAAAGAAATCAAATGAATTTGAAGGTGCGATTAGTTTTGTGCACAAGATAAAGCAACGATTCCAAAATGATGATGAGGAGGTTTACAAATCATTCTTGAAAGTTTTGAATATGTATCGTAAAGGGCGTAAGGATATGGATGATGTTTATAGTGAGGTTGCTGTCCTTTTCAAGGACCATGTCGATTTATTCGACGAATTTTCTAGATACTTACCAGATACTTTTGGAACACATTCTACAGAGGATGCTCCATCTGGCCCGAAATCAATGAAGATAGACAAACAACAATATCAAAGAGACATGCTTCCTGATAAAAATAAAATTGTCAAAAAGGTTGAAGGTGGAGACAAAGAGAAGGAAAGATATATAGATAATAATGAAATAATCCAAAGGAAAGATTTGCAGAATTTGATTGCTCCCTTTTTGAATGAAGAGAGTAATTCACCTCGCAAGATGGTGGTGGCGGCGATGATGGTTTCAGTAGCAATACTGGTGGGAGTGATGTGGCAGAAGATAAATGATGCTCTATGCTATTTGAATGAAGTTAAAGACACATTTCATAACCAAAGTGAAAAATATGACATGTTCCTTGCAATTATGAAAGATTTCAGGGCTCATAGGCTCAGTATTTTGTTTATCTTTTTCAGGATTGACACTGCTTGTGTTGTATCAAAAGTGAAGGAGCTATTCAAAGGGCATGACAATTTGATTTCTGGTTTCAATGCTTTCTTGCCAATGGAATTTGAGATAACACCATATGAAGATGAAGAAACTCTGAAGAAATCAAATGAATTTGAAGGTGCGATTAGTTTTGTGCACAAGATAAAGCAACGATTCCAAAATGATGATGATGAGGTTTACAAATCATTCTTGAAAGTTTTGAATATGTATCGTAAAGGGCGTAAGGATATGGATGATGTATATAGCGAGGTTGCTGTCCTTTTCAAGGACCATGTCGATTTATTCGACGAATTTTCTAGATACTTACCAGATACTTTTGGAACACATTCTACACAGGATGCTCCATCTGGCCCGAAATCATTGAAGATAGACAAACAACAATATCAAAGAGACATGCTTCCTGATAAAAAGAAAATTGTCAAAAAGGTTGAAGGTGGAGGCAAAGAGAAGGAAAGATACATAGATAACAATGAAATAATCCAATGGAAAGATTTGCAGAATTTGGTTGCTCCCTTTTTGAATGAAGAGAGATATTCACCTCGCATGGTGGTGGTGGCAGCAATGATGTTTTCAGTAGCAATACTGGTGGGAGTGATGTGGCAGAAGATGAGTGGGATATAA 1623 0.3635 MRRTNGDSNGQNQIPKVGGRVASVLPKQTTNDALYYLNEVKDTFHDQSEKYDMFLAIMKDFRAHRIDTACVVSKVKELFKGHDNLISGFNAFLPMEFEITPDKDEETLKKSNEFEGAISFVHKIKQRFQNDDEEVYKSFLKVLNMYRKGRKDMDDVYSEVAVLFKDHVDLFDEFSRYLPDTFGTHSTEDAPSGPKSMKIDKQQYQRDMLPDKNKIVKKVEGGDKEKERYIDNNEIIQRKDLQNLIAPFLNEESNSPRKMVVAAMMVSVAILVGVMWQKINDALCYLNEVKDTFHNQSEKYDMFLAIMKDFRAHRLSILFIFFRIDTACVVSKVKELFKGHDNLISGFNAFLPMEFEITPYEDEETLKKSNEFEGAISFVHKIKQRFQNDDDEVYKSFLKVLNMYRKGRKDMDDVYSEVAVLFKDHVDLFDEFSRYLPDTFGTHSTQDAPSGPKSLKIDKQQYQRDMLPDKKKIVKKVEGGGKEKERYIDNNEIIQWKDLQNLVAPFLNEERYSPRMVVVAAMMFSVAILVGVMWQKMSGI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1865 540 ProSiteProfiles PAH domain profile. 110 181 IPR003822 GO:0006355
Lal13g1865 540 SUPERFAMILY PAH2 domain 367 438 IPR036600 GO:0006355
Lal13g1865 540 ProSiteProfiles PAH domain profile. 25 96 IPR003822 GO:0006355
Lal13g1865 540 MobiDBLite consensus disorder prediction 1 16 - -
Lal13g1865 540 PANTHER SIN3B-RELATED 25 251 IPR039774 GO:0003714
Lal13g1865 540 PANTHER SIN3B-RELATED 277 508 IPR039774 GO:0003714
Lal13g1865 540 ProSiteProfiles PAH domain profile. 275 354 IPR003822 GO:0006355
Lal13g1865 540 ProSiteProfiles PAH domain profile. 368 439 IPR003822 GO:0006355
Lal13g1865 540 Gene3D Paired amphipathic helix 109 181 IPR036600 GO:0006355
Lal13g1865 540 Gene3D Paired amphipathic helix 367 439 IPR036600 GO:0006355
Lal13g1865 540 Pfam Paired amphipathic helix repeat 134 178 IPR003822 GO:0006355
Lal13g1865 540 Pfam Paired amphipathic helix repeat 49 93 IPR003822 GO:0006355
Lal13g1865 540 Pfam Paired amphipathic helix repeat 392 436 IPR003822 GO:0006355
Lal13g1865 540 Pfam Paired amphipathic helix repeat 298 351 IPR003822 GO:0006355
Lal13g1865 540 MobiDBLite consensus disorder prediction 1 21 - -
Lal13g1865 540 Gene3D Paired amphipathic helix 32 94 IPR036600 GO:0006355
Lal13g1865 540 Gene3D Paired amphipathic helix 281 352 IPR036600 GO:0006355
Lal13g1865 540 SUPERFAMILY PAH2 domain 278 352 IPR036600 GO:0006355
Lal13g1865 540 SUPERFAMILY PAH2 domain 109 180 IPR036600 GO:0006355
Lal13g1865 540 SUPERFAMILY PAH2 domain 26 94 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1865 Lal-Chr13 18093864 18100641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1865 280 387 WRKY Transcription Factor Family AT4G12020 37.615 2.69e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal13g1865 PAH 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1865 K11644 - gmx:100812405 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1547 12 18707526 18718024 Lal13g1865 13 18093864 18100641 LSH
Lal13g1865 13 18093864 18100641 Lal24g1410 24 15465409 15476433 LSH