Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1864 ATGAGGAGGGCAAGTGGTGATTCAAATGACCAAAATCAAATCCCTAAAGTTGGAGGCAGAATAGCATCTGTTTTGCCAAAACAGACTACAAATGATGCTCTATACTATTTGAATGAAGTTAAAGACACATTTCATGACCAACGTGAAAAATATGACATGTTCCTTGCAATTATGAAAGATTTCAGGGCTCATAGGATTGACACTGCTTATGTTGTATCAAAAGTGAAGGAGCTATTCAAAGGGCATGACAATTTGATTTCTGGTTTCAATGCTTTCTTGCCAATGGAATTTGAGATAACACCATATGAAGATGAAGAAACTCTAAAGAAATCAAATGAATTCGAAGGTGCGATTAGTTTTGTGCACAAGATAAAGCAACGATTCCAAAATGATGATGAGGAGGTTTACAAATCATTCTTGAAAGTTTTGAATATGTATCGTAAAGGGCGTAAGGATATGAATGATGTTTATAGCGAGGTTGCTGTCCTTTTCAAGGACCATGTCGATTTATTCGACGAATTTTCTAGATACTTACCAGATACTTTTGGAACACATTCTACACAGGATGCTCCATCTGGCCCGAAATCATTGAAGATAGACAAACAACAATATCAAAGAGACATGCTTCCTGATAAAAAGAAAATTGTCAAAAAGGTTGAAGGTGGAGGCAAAGACAAGGAAAGATACATAGATAACAATGAATAA 705 0.3574 MRRASGDSNDQNQIPKVGGRIASVLPKQTTNDALYYLNEVKDTFHDQREKYDMFLAIMKDFRAHRIDTAYVVSKVKELFKGHDNLISGFNAFLPMEFEITPYEDEETLKKSNEFEGAISFVHKIKQRFQNDDEEVYKSFLKVLNMYRKGRKDMNDVYSEVAVLFKDHVDLFDEFSRYLPDTFGTHSTQDAPSGPKSLKIDKQQYQRDMLPDKKKIVKKVEGGGKDKERYIDNNE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1864 234 Pfam Paired amphipathic helix repeat 49 93 IPR003822 GO:0006355
Lal13g1864 234 Pfam Paired amphipathic helix repeat 134 178 IPR003822 GO:0006355
Lal13g1864 234 Gene3D Paired amphipathic helix 109 181 IPR036600 GO:0006355
Lal13g1864 234 PANTHER SIN3B-RELATED 26 207 IPR039774 GO:0003714
Lal13g1864 234 SUPERFAMILY PAH2 domain 26 94 IPR036600 GO:0006355
Lal13g1864 234 ProSiteProfiles PAH domain profile. 25 96 IPR003822 GO:0006355
Lal13g1864 234 ProSiteProfiles PAH domain profile. 110 181 IPR003822 GO:0006355
Lal13g1864 234 SUPERFAMILY PAH2 domain 109 180 IPR036600 GO:0006355
Lal13g1864 234 Gene3D Paired amphipathic helix 32 94 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1864 Lal-Chr13 18089788 18091673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1864 18 129 WRKY Transcription Factor Family AT4G12020 40.708 9.05e-19 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal13g1864 PAH 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1864 K11644 - gmx:100812405 235.728