Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1855 ATGGAAGAGATTCAACAAACTCTTAAGCTCTTAGTCCATAGAAAAATCACACACAACAAGAACAAAAAACCAGAACTCATTACTCCAAGGCTCAAATGGAAGCAAATGTTTTTCCAAAAACTATCTTCAAAACCCAACATCAAAAACAAAATTACTGAAAAGCCCCCAGAAGAATTCCTCTGTCCCATAACCAAAACCCTTATGTCAGACCCTGTTATTGTTTCTTCAGGTCACTCCTTCGATCGAATCACCGTTCAAACTTGTCAAAATCTCAACTTTACCCCTCAACTCTATGATGGCACTACCCCTGATTTCTCCACCCTTATCCCTAACCTTGCTCTCAAATCCGCCATTACAAAGTGGTGCATCAACTCAAACAATAGTCTTGTCACACCAGATTCCACCACCGCAGAAAACATCATACGCAAAATCATAGAAAGACATAGTCCGTGTCAGAATCTACCTATCCAAGTTGCTACAGTTTCTGAAAAAGAATTGATTTTGGGAATTAATGAAAACCCTAATTTCAATTTCAATTTTAATCACGCTGAAACTGAAATCCAAAATAGGCCAACCCATTTGTATTCATCATCGAATGAATCCATAGCCACCAATGCTTCAGCTTCAACTTCAACTTCGACACCACCTCTTCAATTTTCAACAAAACCTAGTTGCTACTACTCTTACTCTTCAAATTCCTCTTCAGAAATTGAACCCATCACAACACCTGAATTGGAACAAATCATATCCAAGCTCAAAAACCCCCAAATTTTCATCATCGAAGAGGGTCTAATTTCGCTCAGAAAACTCACGAGAACGAAAGAGGAAATTAGGGTTTCTCTGTGCACCACTCAATTGCTCTCTGTTTTAAAATCTCTGATTGGTTCCAAGTATACGAATATTCAGGTCAACGCTCTTGCTTCATTGGTCAACCTTTCATTGGAGAAATTAAACAAGGTGAAGATCGTACGGTCAGGGATTGTTCCACCGTTGATTGAAGTTTTGAGGCTCGGATCCACTGAGTCGCAGGAACATGCTTCCGGTGCACTCTTTAGTTTGGCAATAGAAGATGATAATAAAACCGCGATTGGCGTTCTTGGTGGTTTGCAACCGTTGCTTCACGCGCTTCGTTCCGAGAGTGAGCGCACGCGCCACGACTCAGCATTGGCACTTTATCATTTGTCTATGGTTCAGAGTAACCGGTCTAAGATGGTTAAGTTTGGTTCGGTTCCGATTTTATTGGGAATGGTTAAGGCCGGTCATATGATTGGTCGAGTTTTGTTGATTTTGTGTAATTTGGGATCCGGGTCGGATGGGCGGGCCGTAATGTTGGATGTGGGTGCTATTGAGTGTTTAGTTGGGTTGTTGGGTGGGACCGAGTTGGGGACTAGGTCAACACGAGATAGTTGTGTTAGTTTGATGCATGTGTTGAGTCATGGTGGGTTGCGATTTAAGGCATTGGCGAAGGCGGCAGGGGTTGTGGAGGTGTTACAAAAGGTGGAGAAGGTCGGGAGCGAGAGGGCTCGGGTGAAGGTTAGGCGGATATTAGAGATGATGAGAGGAAAGGAGGATGAGGAGGAGGATGTGGATTGGGAGGCCCTTCTTGAATCAGGGTTGGGTTGTCGAACTCGCGGCCGACAGGGTAGCGAGTTGGATGAGTCCGTTGCTAACTCGTCTTAG 1680 0.4363 MEEIQQTLKLLVHRKITHNKNKKPELITPRLKWKQMFFQKLSSKPNIKNKITEKPPEEFLCPITKTLMSDPVIVSSGHSFDRITVQTCQNLNFTPQLYDGTTPDFSTLIPNLALKSAITKWCINSNNSLVTPDSTTAENIIRKIIERHSPCQNLPIQVATVSEKELILGINENPNFNFNFNHAETEIQNRPTHLYSSSNESIATNASASTSTSTPPLQFSTKPSCYYSYSSNSSSEIEPITTPELEQIISKLKNPQIFIIEEGLISLRKLTRTKEEIRVSLCTTQLLSVLKSLIGSKYTNIQVNALASLVNLSLEKLNKVKIVRSGIVPPLIEVLRLGSTESQEHASGALFSLAIEDDNKTAIGVLGGLQPLLHALRSESERTRHDSALALYHLSMVQSNRSKMVKFGSVPILLGMVKAGHMIGRVLLILCNLGSGSDGRAVMLDVGAIECLVGLLGGTELGTRSTRDSCVSLMHVLSHGGLRFKALAKAAGVVEVLQKVEKVGSERARVKVRRILEMMRGKEDEEEDVDWEALLESGLGCRTRGRQGSELDESVANSS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1855 559 SUPERFAMILY ARM repeat 244 511 IPR016024 -
Lal13g1855 559 SMART arm_5 356 396 IPR000225 GO:0005515
Lal13g1855 559 SMART arm_5 436 479 IPR000225 GO:0005515
Lal13g1855 559 SMART arm_5 315 355 IPR000225 GO:0005515
Lal13g1855 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 131 IPR013083 -
Lal13g1855 559 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 31 550 - -
Lal13g1855 559 SMART Ubox_2 58 121 IPR003613 GO:0004842|GO:0016567
Lal13g1855 559 Gene3D - 240 518 IPR011989 -
Lal13g1855 559 Pfam Armadillo/beta-catenin-like repeat 357 395 IPR000225 GO:0005515
Lal13g1855 559 ProSiteProfiles U-box domain profile. 54 128 IPR003613 GO:0004842|GO:0016567
Lal13g1855 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 368 IPR000225 GO:0005515
Lal13g1855 559 SUPERFAMILY RING/U-box 51 127 - -
Lal13g1855 559 Pfam U-box domain 56 123 IPR003613 GO:0004842|GO:0016567
Lal13g1855 559 PANTHER U BOX DOMAIN-CONTAINING 31 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1855 Lal-Chr13 18039121 18040800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1855 56 559 U-box Gene Family AT5G40140 54.012 2.67e-171 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1855 - - lja:Lj2g3v1020040.1 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1855 13 18039121 18040800 Lal13g1855 13 18039121 18040800 ECH