Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1851 ATGTATGGGTTTCGTGGTGAAGACTGGAAACAGAGCCGGCACATGTGGCCCGTACCTTCTAACGCGACCACTGTAGTCACCGATTCTCAATTTTTGTGCAAAGATGGACGTAAGATTCGAGTTGGTGATTGTGCACTTTTCAAGCCACTCCAGGATTCCCCTCCTTTTGTTGGAATAATTCGTAGGTTAACTTTCAATAAAGAAGAAAATCCAAGTTTTGAAGTGAATTGGCTTTACCGACCTGCTGATTTGAAGCTTGCTAAAGGGATTTTCCTGGAAGCTGCGCCAAACGAAATCTTCTACTCCTTTCACAAGGATGAAATTTCTGCTGCATCATTACTCCATCCGTGTAAAGTTGCATTCCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGGGCGTATGACATTGTGCGCAACTGTCTACGGTGGCTAACTGATCAGGACTACCTTAATGTCAGTCTTCCTGTATCATTAGTTTTATGCCATTTAATTTTGTGTATAGTTGAGGGTGAGCGTCAGCGCAACTTTAAGGAAGAAATTAACCAGCTATTAGAGAAGACAAAACTAGAAATGCATGGTGCAGTGCAGTCTGGAGGCCGTTCTTCAAAACCATTGAATTGTCCAACAACAACACAATCATTGAAATCTAGTTCTGATAGCATTCAAAGTAGTTCTTTTGGTGTACAAAGTAAGGGAAAAAAGAGAGAACGGGGTGACCAGGGATCCGATTCATCTAAAAAGGAGCGGTTATTTAAAACAGAAGAAGGAGATTCTGGTCAATTTAGACCGGAGAGCATGTTAAAATCTGAGATTGCTAAAATTACTGATAAAGGTGGGCTAGTGGACTTTGACGGAGTTGAAAAACTGGTACAGCTCATGCAACTTGAAAGTGGTGATAAAAAAATAGATTTGGCTGGGCGAGTAATGCTGGTCAATGTTATAGCAGTTACCGACCAGTATGACTGTCTTAGCTGGTTTGTACAGTTCAAGGGTTTGCCTGTGCTGGATGAATGGCTCCAGGAGGTTCATAAGGGCAAAATTGGTGATGGTAATATGCTTAAAGAAAGCGATAAGTCTGTTGAAGATTTTTTGTTGGCTTTACTTCGTGCATTAGATAAGCTTCCTGTGAATCTCAATGCACTACAGACCTGTAATGTTGGAAAGTCTGTTAATCATTTACGGTCTCACAAAAATGCTGAAATTCAGAGGAAAGCTAGGAGTTTAGTTGACACATGGAAGAAACGTGTTGAGGCTGAAATGAAAATGACTGATTCACAATCAGTTTCAACCCATGGCGTTTCTTGGCCAGCAAAGCCAGCATCTTCTGAGGGTTCTCAGGTTGGAAATCGGAAAACAGGAGTATCTTCTGAGAATGTTGCAAAGACCTCTGCGGTTCAACCCTCAGTATCCAAAATTCCCCACTCAAAGCCTAATTCTGGAGAACTATTGTCCAAGTCCCCTTCACCCCCTGGCTCAACTAAAGGGATGAGTACCCTAGCAGGCAGTAACTCTAAAGAAAAAAATATGAAACTCATGGTTGGAGCTGTAACATCAGATCTACCATTGACACCGATCAAGGAGGAAAGGAGCAGCGGTTCTAGTCAGTCTCAAACCAACAGCCTATCTTGTTCTAGCGAACATGCAAAAACTATTGTTTCTTGTAGGGAAGATGCAAGGAGTTCCAGTGCTGTGTCAATGAGTGCAGGTAAAATTCACGGTGGTGTGTCTCGAAATCGGAAATCAAGCAATGGTCTACGTGGGGCTGGTCATGCTGTACCTCAGAAGGAGCCCAGGTCTGCAAAAAATTCAAGTAGAAATTCTCCTGCTGAGAAAGTTTCACCAACTCAAACATCCCATGAAAAATCCCCTGATCACCCCCTTGCCGATCAAGGGAATAGCCAGCGATTGATTCTCAGATTGCCAAACAGTGGTCGAAGTCCTTCAAGGGGAGCTAGCGGGGGCACTTTTGAGGAACCTGCTATTTTGTGCAGCAAAGCTTCACCACCTGCTGAAAAGAATGAGAGTCAAGATACAAGAGTGAAAGCTAAAACTGATTGTTTGCAGACCAATGCTGCATCAAATTTGATAAATGATGCATCTGATGCTAATGGAGCTTTGACTGGTTTTGAGGAAGGTAAGGGCTCTCCGATTGGTGATGAGCGGTGCATGGCTACTGAGGATGGTAATAAAGTAGCTAAAATATTGAAACCAACTAGTTCTTCATCAGGATTTGTTTCCAGATCGGGGCAGATTTATGATGCTTCCTTAAGTCCCATGAATGCATTAGTTGAAAGCTGTGTGAAATTTTCAGAAGCAAGTGTTTCTACTTCCCCCGGTGATGACGGGATGAACCTACTTGCTTCTGTGGCCGCAGGGGAAATATTTAGATCAAAAAATGAGTCACCACTGGCTTCACCTGAGAGGAAGTCTCCTCCAGCAGATGAATCAAGCTCTGGCAATGATTGCAAGTCAAAACATTATGATGGAGGAGTTGCTCGTACTCTTTCAAAATCTGATGGAGGGACTACTGGGGAGCATCATTTGGAGACTGTTGACCCATTGCAATTCAAGAATGATTCAAGGCATCCTGTTACGGCGGTGTCATGCGAGGGTTCTGTAGTTGGTGAAGCAGTGTCGTCAAGTTGTGTTGAAAAAACTGGTGATGACATAACTCGAAAGAATATCTCAGATTTGTTGCAGAAAGCTGAAGGTCCCTACCCATTGCAATTCAAGAATGATTCAAGGCATCCTGTTACGACGGTGTCTCGCGATGGTGCTGGTGATGGTGAATCAGTCTCATCCAGTTGTGTTGACAAAGCTGGTGATGGCAGAACTGGAATGCGATTCTCAGATTTGTTGCAGAAAGCTGAAGGTCCATGCTTACTACCTGAACCCAAAGCGGGGGTTTCCGAAGTTACAGTGCCAGCTATAAAGGAGGCTGATGTGGAGCCGGGAGGAGCAAACCATTTAAATGACCAGAAGGATTTGGGAATTCAATGGGCTAAAGGCAGCAGTAGTTCAGATTCTAAATTGAAGTCAAGAAATTCCTCTTTTGATGAAGATAAGAAGTTTGATCACTTGGATGAGAGAATCACAGAGCATGACAAAATATTGGTTTCAAAGAAGGTCCTTGAGAGTGTAAATATTGAAAAAAAGGAAGTAGATGAAAAATTGCCGGAGTTATCATCAGATATTGGTAATGAGAACCAGATTATTGCAGAGAAAGTGTCAGGTACTGGTATAACAGTGCAAAAGCCCTCTCTAGTTGCAGAAAACTGTGAGCCCATAGATCTGAAAAAGGAGGATATTATGCTACCTACTGCTGCTGGTAATGCTTTGATGGTATCCAGGGATAAAAATGCCGATGACATGAAGTCAGGTGAGATAGAGCCTGATAAAAAACCGATGGATCTGGACTCTGCAGTTTCAGCTGGTATTAATGGATATGTTGAAGAGAGTTTGGGTACAAAGGAGGTTCTTGGTCACTGTTCTGGCATATCAGGTCATGCTGAGTTGCCAATAATTCCTGGGAAAGAGATTGATGTCCCCAAAACATCAGAGTGTAACTTAGATGGGATTGAATCTGAGGCTGCTCTAAAACGACATGCATCCAGTGTTAATCCACCCCTTACAGATTCTGGGTCTGATACTGCAGTGAAACTGGACTTTGATTTAAATGAGGGGTTTCCTGTAGATGATGTGAGCCAAGGGGAGATTGTTAGACAGGAAGAACCCGCTACTTTATCTGCTGTTCATGTTCCGTGTGCATTGCCTTTTCCTATGTCTTCCATGTCTGGGAGCTTGTATGCTTCAATTACAGCAGCATCTGCTGCCAAGGGACCTGTGGTTCCACCAGAAAGCCCAATGCGGAATAAAGGGGAACTCGGATGGAAGGGTTCGGCAGCTACAAGTGCATTCCGGCCAGCTGAACCTAGGAAAATTTCAGAGGCACCATCAAATACCAGTGAAATTCCTTCTGTTGATGCCACTCCTATCAAACAAATCCGCCCTCTTTTAGATTTTGATTTAAATGTGGCAAATGAACTCAGTTTTGACGATGTAGCTTCACATGGTTCTTTAGAATCTGGGCCACATGATCGTAGTAGCACAGTGGGGTTTGATCTTGATTTAAACAGAGTTGATGAGACTCTGGAATCTGTGTCTTTCTCTACGAGCAAACTGGATATTCCTAATGGTGGAAGTGTTTCAAGAGACTTTGATTTAAATAATGGACCAGGCCTGGATGAAGTGGGAACTGAAGTCTCAGCTCGTAGTCAGCAGATGAAAAGTACCACAACATTTCCTTCTGCTGTTCATGGCTCAAGAGCAAATAATCCTGAATTTGGTAATTATTCTTCATGGTTTCCTCCAGGCAATTCTTATTCAGCAATTACTGTCCCACCTCTTTTGGCTGGCAGAGGGGAACAGAGTTATGTTGCTGGTGCACAGCGGATCATGTTTCCTACAGGTAGCACGCCATTTGGTACTGAGTTCTACAGAGAGCCTGTGCTTTCATCCTCGCCTGCTGTTGCTTATCCACCTACTACACCCTTTCCTTATCCAGGATTTCCATTTGAAACCAATTTCCCATTATCTTCAAACTCCCTTTCTGGTTGTTCAACAGCATATATGGATTCATCAACGTTGGGTGGACTTTGCTTCCCTACCATGCCATTGCAGCCTGTTGGGCCAGGTGGTGTTGTCTCATCCACGTATCCCCGTCCATATGTTATGAGTCTCCCAGGTGGTACAAGTAATGTGATTCCTGATAGCAGAAAATGGGGAAGTCAAAGTCTTGATCTTAATGCAGGCCCTGGCAGTGGAGCAGATACAGAAGGGAGAGACGATAGATTGCCTTCTGGGTTGAGGCAAATTCCTGTCCCCAATTCACAAGCTTTGATGGAGGAACACATGAAGATGTTTCAGGTGGCAGGTGTACTGAAGAGAAAGGAACCTGATGGTGGTTGGGATGGAGCTGATAGACTCAGCTACAAACAGCCCTCCTGGCAGTAG 5034 0.437 MYGFRGEDWKQSRHMWPVPSNATTVVTDSQFLCKDGRKIRVGDCALFKPLQDSPPFVGIIRRLTFNKEENPSFEVNWLYRPADLKLAKGIFLEAAPNEIFYSFHKDEISAASLLHPCKVAFLRKGVELPSGISAFVCRRAYDIVRNCLRWLTDQDYLNVSLPVSLVLCHLILCIVEGERQRNFKEEINQLLEKTKLEMHGAVQSGGRSSKPLNCPTTTQSLKSSSDSIQSSSFGVQSKGKKRERGDQGSDSSKKERLFKTEEGDSGQFRPESMLKSEIAKITDKGGLVDFDGVEKLVQLMQLESGDKKIDLAGRVMLVNVIAVTDQYDCLSWFVQFKGLPVLDEWLQEVHKGKIGDGNMLKESDKSVEDFLLALLRALDKLPVNLNALQTCNVGKSVNHLRSHKNAEIQRKARSLVDTWKKRVEAEMKMTDSQSVSTHGVSWPAKPASSEGSQVGNRKTGVSSENVAKTSAVQPSVSKIPHSKPNSGELLSKSPSPPGSTKGMSTLAGSNSKEKNMKLMVGAVTSDLPLTPIKEERSSGSSQSQTNSLSCSSEHAKTIVSCREDARSSSAVSMSAGKIHGGVSRNRKSSNGLRGAGHAVPQKEPRSAKNSSRNSPAEKVSPTQTSHEKSPDHPLADQGNSQRLILRLPNSGRSPSRGASGGTFEEPAILCSKASPPAEKNESQDTRVKAKTDCLQTNAASNLINDASDANGALTGFEEGKGSPIGDERCMATEDGNKVAKILKPTSSSSGFVSRSGQIYDASLSPMNALVESCVKFSEASVSTSPGDDGMNLLASVAAGEIFRSKNESPLASPERKSPPADESSSGNDCKSKHYDGGVARTLSKSDGGTTGEHHLETVDPLQFKNDSRHPVTAVSCEGSVVGEAVSSSCVEKTGDDITRKNISDLLQKAEGPYPLQFKNDSRHPVTTVSRDGAGDGESVSSSCVDKAGDGRTGMRFSDLLQKAEGPCLLPEPKAGVSEVTVPAIKEADVEPGGANHLNDQKDLGIQWAKGSSSSDSKLKSRNSSFDEDKKFDHLDERITEHDKILVSKKVLESVNIEKKEVDEKLPELSSDIGNENQIIAEKVSGTGITVQKPSLVAENCEPIDLKKEDIMLPTAAGNALMVSRDKNADDMKSGEIEPDKKPMDLDSAVSAGINGYVEESLGTKEVLGHCSGISGHAELPIIPGKEIDVPKTSECNLDGIESEAALKRHASSVNPPLTDSGSDTAVKLDFDLNEGFPVDDVSQGEIVRQEEPATLSAVHVPCALPFPMSSMSGSLYASITAASAAKGPVVPPESPMRNKGELGWKGSAATSAFRPAEPRKISEAPSNTSEIPSVDATPIKQIRPLLDFDLNVANELSFDDVASHGSLESGPHDRSSTVGFDLDLNRVDETLESVSFSTSKLDIPNGGSVSRDFDLNNGPGLDEVGTEVSARSQQMKSTTTFPSAVHGSRANNPEFGNYSSWFPPGNSYSAITVPPLLAGRGEQSYVAGAQRIMFPTGSTPFGTEFYREPVLSSSPAVAYPPTTPFPYPGFPFETNFPLSSNSLSGCSTAYMDSSTLGGLCFPTMPLQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNAGPGSGADTEGRDDRLPSGLRQIPVPNSQALMEEHMKMFQVAGVLKRKEPDGGWDGADRLSYKQPSWQ 1677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1851 1677 Pfam TFIIS helical bundle-like domain 374 423 IPR017923 -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 604 628 - -
Lal13g1851 1677 SMART BAH_4 37 152 IPR001025 GO:0003682
Lal13g1851 1677 PANTHER BAH DOMAIN-CONTAINING PROTEIN 916 1677 - -
Lal13g1851 1677 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 910 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 913 947 - -
Lal13g1851 1677 Pfam BAH domain 38 142 IPR001025 GO:0003682
Lal13g1851 1677 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 293 427 IPR035441 -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 428 512 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 1657 1677 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 1006 1026 - -
Lal13g1851 1677 ProSiteProfiles BAH domain profile. 37 152 IPR001025 GO:0003682
Lal13g1851 1677 MobiDBLite consensus disorder prediction 1286 1332 - -
Lal13g1851 1677 CDD TFIIS_I 348 424 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 429 512 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 534 552 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 804 866 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 237 268 - -
Lal13g1851 1677 Gene3D - 25 265 IPR043151 -
Lal13g1851 1677 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 916 1677 - -
Lal13g1851 1677 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 910 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 200 269 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 564 639 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 847 863 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 1595 1611 - -
Lal13g1851 1677 SMART TFS2_5 346 425 IPR003617 GO:0005634
Lal13g1851 1677 MobiDBLite consensus disorder prediction 206 236 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 1595 1629 - -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 647 666 - -
Lal13g1851 1677 ProSiteProfiles TFIIS N-terminal domain profile. 340 426 IPR017923 -
Lal13g1851 1677 MobiDBLite consensus disorder prediction 525 552 - -
Lal13g1851 1677 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 328 432 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1851 Lal-Chr13 17984326 17992064 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal13g1851 BAH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1851 - - lang:109335858 2943.68