Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1843 ATGGCTGAAAGTGGTGAGGTTAATAAAGCATCATTGCCTGAAGCAGAGAAGAAGAAGGAACAAACTTTACCCTTTTATCAACTCTTCTCATTTGCAGACAAATATGACTATGTGCTTATGATCTCTGGAAGCATTGGTGCCATTATTCATGGTTCATCTATGCCTGTTTTCTTTCTTCTCTTTGGTCAAATGGTCAATGGTTTTGGTAAAAACCAAATGGACTTGCACAAAATGACAAATGAAGTGTCAAAGTATGCTCTTTACTTTGTGTACCTTGGCCTTATTGTTTGTATATCATCCTATGCAGAAATTTCATGTTGGATGTACACTGGGGAGAGGCAAGTTAGTACACTGAGGAAGAAGTATTTGGAAGCAGTTTTGAAACAAGATGTTGGTTTTTTTGACACTGATGCTAGAACAGGAGATATTGTTTTCAGTGTCTCAACAGACACACTTCTTGTTCAAGATGCTATTAGTGAGAAGGTTGGTAACTTCATACATTATCTATCAACATTTCTAGCTGGACTAGTGGTTGGTTTTGTGTCAGCATGGAGGCTAGCACTTTTAAGTGTTGCAGTGATCCCAGGCATTGCTTTTGCTGGTGGTTTGTATGCTTATACCCTCACCGGCCTTACGTCGAAGAGTCGTGAATCGTATGCAAATGCGGGCATAATCGCCGAGCAGGCCATTGCGCAAGTTCGAACAGTTTACTCTTATGTTGGAGAGAGCAAGGCACTAAATTCGTATTCTGATGCAATTCAAAACACACTGAAGCTCGGATACAAGGCGGGAATGGCTAAAGGTTTAGGCCTAGGATGCACATATGGTATAGCTTGCATGTCTTGGGCACTGGTTTTTTGGTATGCCGGAGTTTTTATCAGGAATGGACAGACCGATGGAGGCAAAGCATTCACCGCTATTTTCTCTGCTATTGTTGGTGGCATGAGTTTGGGTCAGTCATTTTCAAATTTAGGCGCTTTCAGTAAAGGAAAAGCTGCTGGATACAAATTGATGGAAATCATCAAGCAGAAACCAACAATAGTTGAGGATGTCTCAGACGGAAAGACCTTGCTTGAGGTTAATGGTAACATTGAATTTAAGGATGTTGCTTTTAGCTATCCATCAAGGCCTGATGTGATGATCTTTTCCAAATTCTCGATCTTTTTTCCTGCTGGGAAAACTGTTGCGGTTGTTGGTGGTAGCGGATCTGGAAAAAGCACAGTTGTTTCGCTGATAGAGAGGTTCTATGATCCAAATGAAGGTCAAGTTCTTATAGATAACGTCGACATTAAGACACTGCAACTAAAATGGCTACGCGATCAAATTGGTTTGGTGAATCAAGAACCTGCACTCTTTGCAACTACCATTCTTGAGAACATACTCTATGGAAAACCTGATGCAACAATAGCTGAAGTGGAAGCTGCTACTTCTGCTGCAAATGCTCATAGCTTTATTACATTGCTTCCTAATGGCTATAACACGCAGGTGGGAGAGCGAGGAGTGCAACTATCCGGGGGTCAAAAACAGAGAATTGCGATTGCCAGAGCTATGTTGAAAAATCCAAAGATTCTTCTTTTGGATGAAGCGACCAGTGCTCTTGATGCAGGATCAGAAAGCATTGTTCAAGAGGCGTTAGACCGCCTCATGGTTGGAAGAACGACCGTGGTTGTTGCGCATCGTCTATCAACCATAAGGAATGTTGACACGATTGCAGTTATACAACAAGGGCAAGTTGTTGAGACAGGAACACATGAAGAACTTATAGCCAAGGCAGGCACCTATGCTTCACTAATCAGGTTCCAAGAAATGGTTAGAAATAGGGACTTCTCCAACCCATCAACTCACCGGACACGCTCATCGCGATTGAGCCATTCCCTGTCAACAAAGTCCTTAAGCCTTCGGTCCGGAAGCTTGAGGAATTTAAGCTACCAGTACAGCACAGGAGCCGATGGTCGCATAGAGATGATATCGAATGCTGAAACAGAAAAGAAAAATCCAGCCCCGGAAGGATATTTCTTCCGTTTGCTCATGCTAAATGCTCCTGAATGGCCTTACTCAATTATGGGAGCTGTTGGTTCTGTTCTCTCTGGATTTATTGGCCCAACTTTTGCTATTGTTATGAGCAATATGATTGAGGTGTTTTACTATACAAATTACGCATCCATGGAGAGAAAGACCAAGGAGTATGTTTTCATATACATTGGAGCTGGTCTTTATGCAGTTGGTGCTTACTTGATACAACATTACTTTTTTAGTATCATGGGTGAAAATCTCACTACAAGGGTTAGAAGAATGATGCTTGCTGCAATATTGAGGAACGAAGTTGGATGGTATGATGAAGAGGAACACAACTCAAGCCTTGTTGCAGCAAGGCTAGCAACTGATGCAGCTGATGTGAAATCTGCTATTGCTGAGAGGATATCAGTAATATTGCAAAACATGACATCTCTTCTCACTTCTTTCATTGTTGCTTTCATTGTTGAATGGAGGGTTTCCTTGTTAATCCTAGCAACTTTCCCTCTTCTTGTTCTTGCTAATTTTGCTCAGCAATTATCTCTTAAAGGGTTTGCTGGAGACACAGCCAAGGCTCATGCAAAGACAAGTATGATTGCAGGAGAAGGAGTAAGCAATATCAGAACAGTTGCAGCATTCAATGCTCAAAACAAGATGTTGTCCATTTTTTGCCACGAGCTCCGTGTCCCACAACTTCGAAGCTTGCGTCGCAGTCAAACTTCGGGCCTTTTGTTTGGCCTCTCTCAGCTTGCCCTTTATGCCTCTGAGGCTCTCATTCTATGGTATGGGGCACATTTGGTCAGTAAAGGCGTTTCGACCTTCTCAAAGGTCATCAAAGTCTTTGTGGTATTAGTCATCACTGCAAATTCAGTGGCAGAAACTGTAAGCCTTGCGCCGGAGATAATTCGCGGTGGCGAAGCTGTTGGCTCAGTGTTCTCAATTCTCGACAGGTCAACTAAGATCGACGTTGATGATCCTGATGCTGAAATGGTTGAATCACTTCGCGGGGAGATTGAACTTAGACATGTTGATTTTGCATATCCTTCAAGGCCTGATGTCATGGTGTTTAAGGATTTTAGTCTTCGAATCCGTGCGGGTCAGAGCCAAGCACTAGTTGGAGCAAGTGGTTCAGGGAAGAGTTCAGTTGTTGCGTTGATAGAGCGATTTTATGACCCTATTGCTGGTAAAGTTATGATTGATGGAAAGGACATAAGGAAGTTGAATTTGAAGTCTTTAAGGCTTAAGATTGGTTTAGTACAACAAGAGCCTGCATTGTTTGCAACAAGCATTTTTGAAAACATAGCATATGGAAAAGATGGTGCAACCGAAGCCGAGGTGATCGAAGCTGCACGTGCAGCCAATGTGCATGGTTTTGTTAGTGGTTTACCCGAGGGTTACAAGACACCAGTTGGTGAGAGAGGGGTTCAACTCTCTGGTGGTCAAAAGCAAAGAATTGCTATTGCAAGGGCTGTTCTCAAAGACCCAGCAATACTTCTACTTGATGAGGCCACAAGTGCACTTGATGCCGAATCTGAGTGTATCCTACAAGAAGCATTGGAGAGGGTAATGAGGGGCCGCACCACAGTTCTCGTGGCCCATCGTTTGTCGACCATTAGAGGGGTTGACTGCATCGGCGTGGTGCAAGATGGGTGCATTGTGGAGCAAGGAAGCCATGGTGAACTCATCAGTAGGCCAGAGGGGGCATATTCTAGACTCTTGCAGCTACAACATCATCATATATGA 3756 0.4321 MAESGEVNKASLPEAEKKKEQTLPFYQLFSFADKYDYVLMISGSIGAIIHGSSMPVFFLLFGQMVNGFGKNQMDLHKMTNEVSKYALYFVYLGLIVCISSYAEISCWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDVSDGKTLLEVNGNIEFKDVAFSYPSRPDVMIFSKFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLIDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATIAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVRNRDFSNPSTHRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETEKKNPAPEGYFFRLLMLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYTNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWYDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSIFCHELRVPQLRSLRRSQTSGLLFGLSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTKIDVDDPDAEMVESLRGEIELRHVDFAYPSRPDVMVFKDFSLRIRAGQSQALVGASGSGKSSVVALIERFYDPIAGKVMIDGKDIRKLNLKSLRLKIGLVQQEPALFATSIFENIAYGKDGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECILQEALERVMRGRTTVLVAHRLSTIRGVDCIGVVQDGCIVEQGSHGELISRPEGAYSRLLQLQHHHI 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1843 1251 Pfam ABC transporter transmembrane region 45 314 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1843 1251 Pfam ABC transporter transmembrane region 687 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1843 1251 Gene3D - 354 602 IPR027417 -
Lal13g1843 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 992 - -
Lal13g1843 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1247 IPR027417 -
Lal13g1843 1251 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524
Lal13g1843 1251 Gene3D ABC transporter type 1, transmembrane domain 27 975 IPR036640 GO:0005524|GO:0016021
Lal13g1843 1251 CDD ABC_MTABC3_MDL1_MDL2 364 601 - -
Lal13g1843 1251 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524
Lal13g1843 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1249 IPR039421 -
Lal13g1843 1251 SUPERFAMILY ABC transporter transmembrane region 28 349 IPR036640 GO:0005524|GO:0016021
Lal13g1843 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 601 IPR027417 -
Lal13g1843 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Lal13g1843 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1245 IPR003439 GO:0005524
Lal13g1843 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Lal13g1843 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 974 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1843 1251 Pfam ABC transporter 385 531 IPR003439 GO:0005524
Lal13g1843 1251 Pfam ABC transporter 1028 1176 IPR003439 GO:0005524
Lal13g1843 1251 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1249 - -
Lal13g1843 1251 Gene3D - 1007 1248 IPR027417 -
Lal13g1843 1251 CDD ABC_MTABC3_MDL1_MDL2 1009 1247 - -
Lal13g1843 1251 SUPERFAMILY ABC transporter transmembrane region 674 993 IPR036640 GO:0005524|GO:0016021
Lal13g1843 1251 SMART AAA_5 391 577 IPR003593 -
Lal13g1843 1251 SMART AAA_5 1036 1222 IPR003593 -
Lal13g1843 1251 Gene3D ABC transporter type 1, transmembrane domain 976 1006 IPR036640 GO:0005524|GO:0016021
Lal13g1843 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1843 Lal-Chr13 17919301 17927465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1843 14 1247 Calmodulin-binding Proteins AT2G36910 53.631 0.0 1345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1843 13 17919301 17927465 Lal13g1843 13 17919301 17927465 ECH