Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1842 ATGTCTAGCAGAAGGTCAAGACAGCAATCAACAGGGTCTACAAGAATCTCTGATGACCAAATCAATGATCTTGTTTCAAAGCTGCGTCAACTTGTTCCTGAAATTCACCATAGGCGCTCTAACAAGGTATCAGCATCTAAGGTCCTACAAGAAACCTGCACCTACATCAGAAACTTACATAGAGAAGTTGATGACTTAAGTCAACGTCTCTCTCAGTTGTTGACAACAATTGATTCTGATAGTGCTGAAGCTTCTATCATTAGGAGCCTAATTAACCAATAA 282 0.3972 MSSRRSRQQSTGSTRISDDQINDLVSKLRQLVPEIHHRRSNKVSASKVLQETCTYIRNLHREVDDLSQRLSQLLTTIDSDSAEASIIRSLINQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1842 93 CDD bHLH_AtPRE_like 10 76 - -
Lal13g1842 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lal13g1842 93 Coils Coil 56 76 - -
Lal13g1842 93 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Lal13g1842 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Lal13g1842 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 78 IPR036638 GO:0046983
Lal13g1842 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Lal13g1842 93 Gene3D - 1 89 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1842 Lal-Chr13 17895440 17897324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1842 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 63.830 1.10e-35 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal13g1842 HLH 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1842 - - gmx:100796852 137.887