Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1839 ATGGTACCTCTTCAAGGTCTCGAAATTCGACCTTTGTTTCTAGAAAGATACAAAGAAAAAAACAACAAAGATGTGAAAAAGGAAACTAGTTCAAATGTTTGGACCAAATTGATGTTTTCCTTAGGTTGTTTGGCTTTGTGGTCAAACGCAAGAGACTCCTCACAAGGAAATAAATCTGATGATGGTAATGATGGGGACCAATCAGAATACTCAACCAACAAGAATTCAGAATCTGAATCCCATCATGGCATAAGTGAGAAACTAAAGGCTTATCCTAATCTCAGAAGTTTCTCTTATAATGAGCTTAAGTTGGCAACACATAATTTTAAAGCTCGACATGTTCTTGGAGTGGGAGGCTTTGGTACTGTATACAAAGGATGGATCACTAATCAAGTTGATAAATCTCCATTGAGATATGGAATGAAATTGCCAGTTGCAGTGAAGACTCTTAACCCAGATGGATTTCAGGGTCATAAGGAATGGCTTGCTGAAGTTAACTATCTTGGTGAACTTCTTCATCCAAATCTAGTGAAATTGGTTGGATATTGCATTGAAGATGAACAAAGGCTACTTGTATATGAGTTTATGTGTCGAGGAAGCTTAGAACGCCATTTATTTAGGAGAAATGTGTTCCTTCCATGGTCTATCAGAATTAAAATTTTGCTTGGTGCTGCCAAGGGCCTTGCATTTCTGCATGAAGAAGCAGAAAGTCCTGTTATATTTAGAGACTTCAAAACATCAAATATCCTTTTGGATCGGGATTATAATGCAAAACTTTCTGATTTTGGGTTAGCTAAAGATGCACCAGTTGGAGACTCAACTCATGTGTCAACAAAGGTATTTGGAACACATGGCTATGCAGCTCCTGAGTATGTGACCACTGGACACCTTACATCGAAAAGTGATGTATATAGTTTTGGAGTTGTGCTATTGGAAATGCTTACTGGCCGAAGAACAGTGGACAACGATAAGCCTCGTGGGGAACGAATCTTGGTCGAATGGGCACGGTCACACCTTAAGCACAAAACAAGGTTAAATGAACTAGTCGATCCAAGATTTAAGGATCAATTTCCGGTAAATGGTGCTTCCAATGGTCTAAGGCTGGCTGGGAAATGTCTTAGCTTTGATCCAAAAGCTAGACCTCTTATGAGTGCAGTGGTTCAAGAATTGACCGAGATAAGTAATATGCCATATTCATCGTCCTCTTCTCGATCCATGAAGGCGAGCCCACCTAATCAAACACCAAGCTCATCGCAAAGAAATTCACCAATTCGCTTCAAACCCTCCCCACAGCATCAACCAAATTATCCCCTTCCAACACCAAAACCTTGTGCTGGAAAAGAGGTCTTGAAATTAGAATGA 1362 0.3987 MVPLQGLEIRPLFLERYKEKNNKDVKKETSSNVWTKLMFSLGCLALWSNARDSSQGNKSDDGNDGDQSEYSTNKNSESESHHGISEKLKAYPNLRSFSYNELKLATHNFKARHVLGVGGFGTVYKGWITNQVDKSPLRYGMKLPVAVKTLNPDGFQGHKEWLAEVNYLGELLHPNLVKLVGYCIEDEQRLLVYEFMCRGSLERHLFRRNVFLPWSIRIKILLGAAKGLAFLHEEAESPVIFRDFKTSNILLDRDYNAKLSDFGLAKDAPVGDSTHVSTKVFGTHGYAAPEYVTTGHLTSKSDVYSFGVVLLEMLTGRRTVDNDKPRGERILVEWARSHLKHKTRLNELVDPRFKDQFPVNGASNGLRLAGKCLSFDPKARPLMSAVVQELTEISNMPYSSSSSRSMKASPPNQTPSSSQRNSPIRFKPSPQHQPNYPLPTPKPCAGKEVLKLE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1839 453 SUPERFAMILY Protein kinase-like (PK-like) 92 412 IPR011009 -
Lal13g1839 453 ProSiteProfiles Protein kinase domain profile. 109 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1839 453 Gene3D Transferase(Phosphotransferase) domain 1 196 410 - -
Lal13g1839 453 MobiDBLite consensus disorder prediction 397 429 - -
Lal13g1839 453 Pfam Protein kinase domain 111 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1839 453 PANTHER TYROSINE KINASE FAMILY PROTEIN 57 439 - -
Lal13g1839 453 Gene3D Phosphorylase Kinase; domain 1 83 195 - -
Lal13g1839 453 ProSitePatterns Protein kinases ATP-binding region signature. 115 148 IPR017441 GO:0005524
Lal13g1839 453 MobiDBLite consensus disorder prediction 397 453 - -
Lal13g1839 453 MobiDBLite consensus disorder prediction 51 85 - -
Lal13g1839 453 PANTHER OS01G0588500 PROTEIN-RELATED 57 439 - -
Lal13g1839 453 CDD STKc_IRAK 115 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1839 Lal-Chr13 17841242 17846902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1839 57 422 Glycoside Hydrolase AT3G07070 45.528 5.51e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal13g1839 Pkinase 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1839 - - sly:101257072 464.536