Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1833 ATGCATATTAACTTTTTAGTGTTTTTTTATATGCAACTTACTATCTATTGTCGTTCATTTTCTATATATGTTGTTGCCAAAGCTCCAGAATGTTGTACTTCAATTGCTAATATAGATAACATAAGTGTTCTTAACCATGCGAATGTACGGACAACATGTGTGTTTCAACTATACGAATGTATAGCAATGACGGAGGGTCATCAATTTAACAACATCACCCTTGGTGGCCGTGGCGGCACCAATACAGGGCAGATGAAAATATATTCAGAAGGCATTTTATGGAGGAGACAAGGTGGTGGTAAATTAATTGAAGTTGATAAAGATGACATAATGGGTGTGACATGGATGAAGGTTCCAAGGACCAATCAACTCGGTGTTCAAATTAAAGATGGGTTGTTCTACAAGTTCACCGGATTCCGTGATCAGGATGTTGCAAGTTTGACAACGTTTTTCCAAAACACCTTCGGAATAGAAGTACAGGAGAAGCAGCTTTCTGTTACTGGGCGTAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTCATGGTTAGTTCAAAGCAAGCTTTTGAGTTGTCTCTAGCTGATGTCGCTCAAACACAGCTTCAAGGGAAAAATGATGTGATTTTGGAGTTTCATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCATTGATGGAGATAAGTTTCCACATACCAAATTCCAACACTCAATTTATTGGTGACGAAAATCGTCCTCCTGCTCAAGTTTTCCGTGACCAAATCATGTCTATGGCTGATGTTGGTGTTGGAGGTGAAGATGCTGTCGTTACATTTGAGGGTATTGCAATCCTTACGCCAAGGGGACGATACAGTGTTGAGTTACATTTGTCTTTCTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCCAATCAGCCACACACCTTTGTCATTATCAGTCTCGACCCTCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTTAGTTGTGCAAAGCGAATTGTCAATGGGCGAAGATCTTTATAACACCAAATACAAGGACAAGTTGGATATGTCTTATAAGGGACTTATCAATGAAGTCTTCACTACAATACTGCGTGGACTATCTGGTGCCAAAGTTACCAAACCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCGTTGAAAGCTGAAGATGGAATTCTATACCCCCTTGAGAAAAGCTTCTTCTTTCTTCCTAAACCTCCCACCCTTATTCTTCATGAAGAGATTGACTATGTAGAATTTGAGCGACATGCTGCTGGTGGTTCAAATATGCATTACTTTGACCTTCTGGTCAGACTAAAATCTGACACAGAACATCTTTTCCGTAATATCCAGAGAAATGAATACCACAATTTGTATGGTTTTATCAGTTCAAAGGGTTTGAAAATTATGAACTTAGGAGATGCCCAGGCCCCTGGTGGTATGGCTAAGGTTCTTGAGACCGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATTAAAAATGAAGCTGGTGGTGGAGATGAAAGTGATGAGGAGGACGAAGATTTTGTTCTTGATAAGGATGATGGAGGTTCTCCGACTGATGATTCTGGAGGAGATGATTCTGATGCTAGTCAAAGTGGCGATGATGAGAAAGAGGCAAGTATATATTTATCTAAGCCTGCTAAAAAGGAACCAAAGAAGGACTTGTCTTCTAAGGCATCTACTTCTAAGAAGAAATCAAAAGATACTGATGAAGATGGAAAGAAGAAGAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCATTGTCTGGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCGTTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAACAAGTTGTCAGCGGAAGAGAAGGAACCATATGAAGCAAAAGCTCGTGCAGATAAAATACGTTACAAGGATGAGATTAGTGGTTACAACAAGAATCCACAACCCATGAATGTTGATTCGGGAAATGAATCCGACAAGTATGAGAGTGAGTTAACAAACAACACAACAAGAAGAGAACTAAGGCAAGGGAAAAAAGCCAGAGGACCATGCCAAGCCACCAATCCCATTGACAGATGCTGGAGGTGCCAAAGAAAGTGGGCAAATGACCGTTTCAGGTTAGCCAAATGCGGCAGAGGGTTCGGGCGAAGAGCCACGGGAGGCCTCGGTGGCCGAATCTATGTTGTTACCAACCCATCAGACAACAATGTAGCTGAGCCTGAACCAGGAACTCTTCGTTTTGGTGCAGTACAAAAGGGTCCATTGTGGATCATATTCAAAACTAGTATGGTCATTAATTTGCAACAAGAATTGTTGGTTTCTTCAGACAAAACCATTGATGGTCGTGGTGCTAATGTTCAGATTAAGGGTGGTGCTGGAATCACAATGCAGTTTGTTAACAATGTTATCATTCACAACCTTAGGATTAGTAAGATTGTTGCTAAGAATGGTGGTCTTGTAAGAGATTCTTTTAACCATGTTGGGTTTAGAACAAGGAGTGATGGTGATGCTATCTCTATTTATCAATCTTCTAACATTTGGATTGATCATATCTCTTTGTCTCAAAGTGAGGATGGTCTTGTTGATGTTATTCAAGGTTCCACTGGCATCACAATCTCAAATTGCCACATGACCAAGCATAACGATATGTACGGATTCGAAGCTATGACTTTCAACATCCACGGTGGTTACCTAGAAGCCATCGTCCGCGGCCACCGTGCCGGACTTCTCACCACCGCCGACTACAACAACCTCTGCCAATGTGAATCCCTTGACGACATCAAGATGCACCTCTCCGCCACCGATTACGGTTCTTACCTCCAAAACGAACCTTCACCATTGCATACAACTACAATTGTGGAGAAATGTACTCTGAAACTTGTTGATGATTACAATCATATGTTGTGTCAAGCTACTGAACCTTTATCCACTTTCCTTCAATACATCACATATGGTCACATGATAGACAATGTTGTTTTGATTGTTACTGGAACTTTGCATGAGAGGGATGTCCAAGAACTGTTAGAAAAATGCCACCCACTGGGCATGTTTGATAGTATTGCCACACTGGCAGTTGCTCAGAATATGCGGGAGCTTTACAGGCTGGTACTTGTTGATACTCCTCTCGCTCCGTACTTCTCCGAGTGCATTACATCAGAGGACTTGGATGACATGAACATAGAAATAATGAGGAATACTCTTTACAAGGCATACCTTGAAGACTTTTACCGATTTTGTCAGAAACTTGGGGGTGCTACTGCTGAGATCATGTCTGACCTTCTAGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTTCCATAAACAGCATTGGTACCGAGCTCACTAGAGATGATCGTAGAAAGCTGTACTCTAATTTTGGTTTACTATATCCCTATGGACATGAGGAACTTGCTGTCTGCGAGGACATTGATCAGGTTCGTGCTGCTATGGAAAAGTATCCCCCTTACCAGTCTATTTTTGCAAAGTTATCATATGGAGAGAGCCAAATGCTTGACAAGGCATTCTATGAGGAGGAGGTGAAGAGGCTTTGCTTGGCGTTTGAGCAACAGTTCCATTACGGCGTATTCTTCGCATACATGAGGCTAAGGGAGCAGGAGATCAGGAACCTAATGTGGATTTCAGAATGTGTGGCACAGAACCAGAAGTCTAGAGTTCATGACAGTGTGGTTCTCATATTTTAG 3855 0.414 MHINFLVFFYMQLTIYCRSFSIYVVAKAPECCTSIANIDNISVLNHANVRTTCVFQLYECIAMTEGHQFNNITLGGRGGTNTGQMKIYSEGILWRRQGGGKLIEVDKDDIMGVTWMKVPRTNQLGVQIKDGLFYKFTGFRDQDVASLTTFFQNTFGIEVQEKQLSVTGRNWGEVDLNGNMLAFMVSSKQAFELSLADVAQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFIGDENRPPAQVFRDQIMSMADVGVGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDLVVQSELSMGEDLYNTKYKDKLDMSYKGLINEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLVRLKSDTEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQAPGGMAKVLETDDDDAVDPHLERIKNEAGGGDESDEEDEDFVLDKDDGGSPTDDSGGDDSDASQSGDDEKEASIYLSKPAKKEPKKDLSSKASTSKKKSKDTDEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWNKLSAEEKEPYEAKARADKIRYKDEISGYNKNPQPMNVDSGNESDKYESELTNNTTRRELRQGKKARGPCQATNPIDRCWRCQRKWANDRFRLAKCGRGFGRRATGGLGGRIYVVTNPSDNNVAEPEPGTLRFGAVQKGPLWIIFKTSMVINLQQELLVSSDKTIDGRGANVQIKGGAGITMQFVNNVIIHNLRISKIVAKNGGLVRDSFNHVGFRTRSDGDAISIYQSSNIWIDHISLSQSEDGLVDVIQGSTGITISNCHMTKHNDMYGFEAMTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCESLDDIKMHLSATDYGSYLQNEPSPLHTTTIVEKCTLKLVDDYNHMLCQATEPLSTFLQYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNISINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRAAMEKYPPYQSIFAKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVLIF 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1833 1284 Gene3D - 401 509 IPR011993 -
Lal13g1833 1284 Gene3D - 738 974 IPR012334 -
Lal13g1833 1284 PANTHER FACT COMPLEX SUBUNIT SSRP1 63 710 - -
Lal13g1833 1284 CDD PH1_SSRP1-like 269 402 - -
Lal13g1833 1284 Gene3D - 157 241 IPR038167 -
Lal13g1833 1284 CDD HMGB-UBF_HMG-box 627 692 - -
Lal13g1833 1284 Pfam POB3-like N-terminal PH domain 68 160 IPR035417 -
Lal13g1833 1284 Gene3D - 61 155 IPR011993 -
Lal13g1833 1284 SUPERFAMILY V-type ATP synthase subunit C 947 1281 IPR036079 -
Lal13g1833 1284 MobiDBLite consensus disorder prediction 708 730 - -
Lal13g1833 1284 MobiDBLite consensus disorder prediction 573 618 - -
Lal13g1833 1284 SUPERFAMILY PH domain-like 268 502 - -
Lal13g1833 1284 SMART Rtt106_2 410 503 IPR013719 -
Lal13g1833 1284 Pfam Pectate lyase 821 933 IPR002022 -
Lal13g1833 1284 SUPERFAMILY Pectin lyase-like 729 935 IPR011050 -
Lal13g1833 1284 Pfam HMG (high mobility group) box 627 695 IPR009071 -
Lal13g1833 1284 SMART amb_all 813 995 IPR002022 -
Lal13g1833 1284 MobiDBLite consensus disorder prediction 690 734 - -
Lal13g1833 1284 SMART hmgende2 626 696 IPR009071 -
Lal13g1833 1284 Gene3D High mobility group box domain 610 709 IPR036910 -
Lal13g1833 1284 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 627 695 IPR009071 -
Lal13g1833 1284 CDD PH2_SSRP1-like 404 503 - -
Lal13g1833 1284 Pfam ATP synthase (C/AC39) subunit 949 1277 IPR002843 GO:0046961
Lal13g1833 1284 Pfam Histone chaperone Rttp106-like 412 501 IPR013719 -
Lal13g1833 1284 PRINTS Structure-specific recognition protein signature 281 297 IPR000969 GO:0003677|GO:0005634
Lal13g1833 1284 PRINTS Structure-specific recognition protein signature 303 319 IPR000969 GO:0003677|GO:0005634
Lal13g1833 1284 PRINTS Structure-specific recognition protein signature 326 342 IPR000969 GO:0003677|GO:0005634
Lal13g1833 1284 PRINTS Structure-specific recognition protein signature 391 404 IPR000969 GO:0003677|GO:0005634
Lal13g1833 1284 PRINTS Structure-specific recognition protein signature 418 436 IPR000969 GO:0003677|GO:0005634
Lal13g1833 1284 PRINTS Structure-specific recognition protein signature 436 453 IPR000969 GO:0003677|GO:0005634
Lal13g1833 1284 PRINTS Structure-specific recognition protein signature 462 478 IPR000969 GO:0003677|GO:0005634
Lal13g1833 1284 PRINTS Structure-specific recognition protein signature 478 496 IPR000969 GO:0003677|GO:0005634
Lal13g1833 1284 MobiDBLite consensus disorder prediction 532 634 - -
Lal13g1833 1284 Gene3D - 261 400 - -
Lal13g1833 1284 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 63 710 - -
Lal13g1833 1284 SUPERFAMILY HMG-box 618 702 IPR036910 -
Lal13g1833 1284 Pfam Structure-specific recognition protein (SSRP1) 168 236 IPR024954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1833 Lal-Chr13 17780628 17794700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1833 934 1284 Primary Pumps ATPases(2) AT3G28710 93.162 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal13g1833 vATP-synt_AC39 2.4e-112 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1833 K09272 - gmx:100805034 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1833 13 17780628 17794700 Lal13g1833 13 17780628 17794700 ECH