Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1830 ATGGGTTTTGGAAATAATAATACTGCAATTGAAGCTGGGAGTTTAGAAGTGGGAAAGTCAAAGGTAGATGGTGGTGAAGAGAAGAAGAGAACATGTTTTCCTAAATTTAGTTTCTGTGGAAGCTGTATACCTTCAACATCAAAGGTTGATAATTCCATAAGTGCCACTACTTCCCAAAATGTGGAAAAAAAGTCATCATTTGAAAAAAGCACACATGGAACGGTTGCTCCTCCAGAGTCCTCATCGACAAATAGTAATGTGGAAAGTATCCCTTCTACTCCAAAATTCAGTGAGGAGTTGAAGGTTGCTTCTAGTTTGAGAAAATTCACATTCAATGGTCTTAAGGTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTTGGTTGCGTCTTCAAGGGTTGGATTGAGGAGAACGGAACCTCACCTGTGAAACCAGGCACTGGGCTAACTGTCGCAGTCAAGACCCTCAACCACGATGGAAATCAGGGTCACAAAGAATGGCTTGCCGAGTTATACTATCTCGGTGACCTTCTCCATCCTAATCTAGTTAAACTAATTGGTTTCTGCATTGAAGATGACCAAAGATTATTAGTTTATGAGTTTATGCCCCGAGGCAGTTTGGAGAACCATCTCTTTAGAAAAGGGCCTTTGCCTCTTCCTTGGTCTATTAGAATGAAAATTGCACTTGGCGCTGCAAAAGGTCTCGCTTTTCTCCATGAAGAAGCTAAGAGGCCAATAATATATCGTGATTTCAAGACATCTAATATTTTGTTAGATGCGGAATACAATGCGAAGCTCTCTGATTTTGGATTGGCCAAAGACGGTCCCGAGGGGGAAAAGACACATGTATCGACAAGAGTTATGGGAACATATGGATATGCCGCTCCGGAGTATGTTATGACAGGACATTTGACATCGAAGAGTGATGTGTACAGTTTTGGAGTAGTGCTACTGGAAATGCTCACTGGACGCCGATCTATCGATAAGAGAAGACCAAATGGTGAACACAATCTGGTGGAGTGGGCAAGACCTGTACTTGGAAACTGGAGGATGTTCCTCCGGATGATTGATCCCCGCCTTGAAGGTCATTTCTCGGTTAAAGGAGCACAGAAAGCTGCTCAGCTGGCTGCTCAATGTCTTAGCCGAGACCCGAAAGCTAGACCTGTGATGAATGAAGTTGTTCAAACTTTAAAGCCTTTGCCTAACCTTAAAGATATGGCTATCTCCTCTTACCACTTCCAAGTTGCGCGAGTTGATCGCACTTTGTCCATGCCGAATCGTAAAAGTGTTATTAAAACACAGTTAGTATCTTTACCAAAGAAGGGTCAACCTATAAGGACCTTGTCAAGTCCAAATGCACCACATGGTTCTCCATATCCTCATTATAGCAAGTCTCCAAAACCTAATGTCTAA 1428 0.4272 MGFGNNNTAIEAGSLEVGKSKVDGGEEKKRTCFPKFSFCGSCIPSTSKVDNSISATTSQNVEKKSSFEKSTHGTVAPPESSSTNSNVESIPSTPKFSEELKVASSLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTSPVKPGTGLTVAVKTLNHDGNQGHKEWLAELYYLGDLLHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRKGPLPLPWSIRMKIALGAAKGLAFLHEEAKRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKRRPNGEHNLVEWARPVLGNWRMFLRMIDPRLEGHFSVKGAQKAAQLAAQCLSRDPKARPVMNEVVQTLKPLPNLKDMAISSYHFQVARVDRTLSMPNRKSVIKTQLVSLPKKGQPIRTLSSPNAPHGSPYPHYSKSPKPNV 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1830 475 ProSitePatterns Protein kinases ATP-binding region signature. 127 159 IPR017441 GO:0005524
Lal13g1830 475 Pfam Protein kinase domain 124 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1830 475 PANTHER OS01G0588500 PROTEIN-RELATED 55 467 - -
Lal13g1830 475 SUPERFAMILY Protein kinase-like (PK-like) 95 402 IPR011009 -
Lal13g1830 475 MobiDBLite consensus disorder prediction 44 92 - -
Lal13g1830 475 ProSiteProfiles Protein kinase domain profile. 121 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1830 475 MobiDBLite consensus disorder prediction 446 475 - -
Lal13g1830 475 Gene3D Transferase(Phosphotransferase) domain 1 207 422 - -
Lal13g1830 475 Gene3D Phosphorylase Kinase; domain 1 101 206 - -
Lal13g1830 475 CDD STKc_IRAK 127 405 - -
Lal13g1830 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Lal13g1830 475 PANTHER RECEPTOR-LIKE KINASE PLANT 55 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1830 Lal-Chr13 17757446 17763312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1830 107 418 Glycoside Hydrolase AT3G07070 55.096 5.99e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal13g1830 Pkinase 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1830 - - aprc:113861691 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1830 13 17757446 17763312 Lal7g1400 7 18970247 18976801 ECH
Lal13g1830 13 17757446 17763312 Lal4g1173 4 15317880 15324901 ECH
Lal13g1830 13 17757446 17763312 Lal13g1830 13 17757446 17763312 ECH
Lal18g0859 18 11149484 11152986 Lal13g1830 13 17757446 17763312 ECH