Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1819 ATGGGAAGACCACCATGTTGTGATAAAGAAGGTGTGAAAAAAGGACCTTGGACTCCTGAAGAAGATATAATTTTGGTGTCTTATATACAGGAACATGGTCCTGGTAATTGGAGGGCTGTTCCTACAAGTACTGGGTTGTCAAGGTGCAGCAAGAGTTGCAGACTTAGATGGACAAATTACCTTAGGCCAGGAATCAAGAGGGGCAACTTCACAGATCAAGAGGAAAAGATGATAATCCACCTTCAAGCACTTTTAGGAAATAGATGGGCTGCTATAGCTTCATACCTTCCGCAAAGAACAGACAATGATATAAAGAACTATTGGAACACATACTTGAAAAAGAGGATCAAGAAATTGGAATCAGGAACTGAAGGAGGAAGCTTAGGAAATGTGTATAATTCAGGTTCAAAGCCAATACCAAGAGGCCAATGGGAAAGAAGGCTCCAAACTGATATCCACATGGCCAAGAAAGCTCTCAATGAAGCACTCTCACCAAACAAAATGGTTTCATTACCTGAAACAAATGATAGCAAACTTTCTAATGATATTGTTGGATCCATAAAACAAACAACACCTAATTCTATATGCTATGCTTCAAGTGCTGATAACATAGCTCGTTTGTTGAAGGGTTGGATGAAGAATCCACCAAATAAGGCTTCATCAAAATCTAACTCAATTATGAGTAGTACTCATAATTCCTTCAACAACTTGGCTGGATTTGACACTGCTTCTAGTGAAGGAACTCCAAGTGATAGGGCAAAAGGGTGCAATAATGTGGAGTTGTCAGAGACATTTGAGTCCTTGTTTGGTTATGGATCTTTGGATTACTCTTCAAATTCTGAATTTTCTCCATCTTTGTCACCTGAGACTAGTACTTTTTTCCAAGATGAGAGTAGGTCTGGTACTACTAGAATTGATGAAATACCATTCTCTTTGCTTGAGAAATGGCTTCTAGATGATAGTAAAATTAGTTTAGATGCCACTTTGTTTTAG 993 0.3857 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTYLKKRIKKLESGTEGGSLGNVYNSGSKPIPRGQWERRLQTDIHMAKKALNEALSPNKMVSLPETNDSKLSNDIVGSIKQTTPNSICYASSADNIARLLKGWMKNPPNKASSKSNSIMSSTHNSFNNLAGFDTASSEGTPSDRAKGCNNVELSETFESLFGYGSLDYSSNSEFSPSLSPETSTFFQDESRSGTTRIDEIPFSLLEKWLLDDSKISLDATLF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1819 330 CDD SANT 69 112 IPR001005 -
Lal13g1819 330 SMART sant 66 114 IPR001005 -
Lal13g1819 330 SMART sant 13 63 IPR001005 -
Lal13g1819 330 CDD SANT 16 61 IPR001005 -
Lal13g1819 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal13g1819 330 Gene3D - 68 126 - -
Lal13g1819 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lal13g1819 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 323 - -
Lal13g1819 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal13g1819 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal13g1819 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal13g1819 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal13g1819 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal13g1819 330 MobiDBLite consensus disorder prediction 278 298 - -
Lal13g1819 330 Gene3D - 13 66 - -
Lal13g1819 330 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1819 Lal-Chr13 17663787 17665776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1819 1 320 MYB Transcription Factor Family AT5G62470 50.000 3.75e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g1819 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1819 K09422 - gmx:780542 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1443 12 17656402 17658156 Lal13g1819 13 17663787 17665776 LSH
Lal13g1819 13 17663787 17665776 Lal24g1384 24 15219766 15221230 LSH