Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1818 ATGCCTAAGGCTAAATACCTGGGTTTTGAAGAATTTGGTAGCATGAGGAAGCGTCAAGTAGTAGTTAGAAGATCAGAGGAACCACCTGCAAGAAGTGTTAGGAATGTAAAATATGGAGAGTGTCAAAAGAATCATGCTGCTAATGTTGGAGGATATGCTGTTGATGGTTGCAGAGAATTCATGGCAAGTGGTGATGAAGGTACAGATTCTGCTCTCACTTGTGCTGCTTGTGGCTGCCACAGAAACTTCCATAAAAGAGAGGTTGAGACTGAAACAGTGAGTGGATGCTCTTCACCAACCTCTTCAGGAACTTGA 315 0.4317 MPKAKYLGFEEFGSMRKRQVVVRRSEEPPARSVRNVKYGECQKNHAANVGGYAVDGCREFMASGDEGTDSALTCAACGCHRNFHKREVETETVSGCSSPTSSGT 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1818 104 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 37 88 IPR006456 -
Lal13g1818 104 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 20 99 - -
Lal13g1818 104 Pfam ZF-HD protein dimerisation region 35 88 IPR006456 -
Lal13g1818 104 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 38 87 IPR006456 -
Lal13g1818 104 PANTHER BNAA09G44460D PROTEIN 20 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1818 Lal-Chr13 17647010 17648734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1818 15 103 Zinc finger-homeobox gene family AT3G28917 65.657 4.87e-40 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal13g1818 ZF-HD_dimer 5.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1818 - - lang:109339447 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1818 13 17647010 17648734 Lal13g1818 13 17647010 17648734 ECH