Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1806 ATGGAAGCAATGAGAAATGTTACAAGATACATGCAATTAGATCAAGTGTATGAATTGCCACCAGGTTTTCGGTTTCATCCAACTGATCAAGAACTCATAATTTACTACCTCTCTGAGAAGGTTCTTGACAAAAATTTCAGTGCTATAGCCATTGGAGAAGTTGATTTGAATAACTCTGAACCATGGGAATTACCTAGTATGGCGAAAATGGGTGAGAAAGAGTGGTATTTTTTCTGTGTGAGGGACAAGAAATACCCAACAGGTCAAAGGACAAATAGGGCGACTGAAGCTGGTTATTGGAAGGCCACAGGAAAAGACAAAGATATATATCAGGGAAAGGCACTAATTGGAATGAAGAAAACTCTGGTTTTCTATAAAGGAAGAGCTCCAAAGGGTGAAAAATCTAACTGGGTCATGCATGAATATAGATTGGATGGACAAAACTCTATGAATAATCTATCTAAATCATCTAAGGAAGAATGGGCTGTTTGTAGAGTTTTTCAAAAGAGTTCTTGTGGAAAGAGAATGCATGTTCCAATGTTGCTAGAACATTCTCCAATAATTGATTCTCTTCCTCTTTCTTACAAGAGTGAAACAAAAAATGTTGTTGGTGAATCATCATATGTAACAAATGTGACAACTTTTTCTAGTCCAAATCAAAATGAAGATCTAAAGAAACAAGATGATATCATAGTTGATAGCTTTGAAGCTCCTATGTTAGCACCACCTTCTTCATATCATTCTGAAATTTCACCTTTCACATGGAACTTTACAAACATTACCACTCCTAGTGAAAACAATCAAGTTGGGAATAATGCACATAACTTAGGTAGTGGTTATTTCATGAATCAAGATGAGTCTATGATGAGCATGTTGATTGAAGACCATGGATCAAGTACAATGAAAAACATTAATAATCACAAAGCTAAGGAAAGTGATTTTGATGTGATGTACAACAATGAAATGTTCCAATCATCTTTTGTTGGAAATCAAGGATGTTTATCTGCTTCTTTAGGACATGTAGTTCCTTCTTCTGGGTGCATGTGGAATTTCTAA 1056 0.3542 MEAMRNVTRYMQLDQVYELPPGFRFHPTDQELIIYYLSEKVLDKNFSAIAIGEVDLNNSEPWELPSMAKMGEKEWYFFCVRDKKYPTGQRTNRATEAGYWKATGKDKDIYQGKALIGMKKTLVFYKGRAPKGEKSNWVMHEYRLDGQNSMNNLSKSSKEEWAVCRVFQKSSCGKRMHVPMLLEHSPIIDSLPLSYKSETKNVVGESSYVTNVTTFSSPNQNEDLKKQDDIIVDSFEAPMLAPPSSYHSEISPFTWNFTNITTPSENNQVGNNAHNLGSGYFMNQDESMMSMLIEDHGSSTMKNINNHKAKESDFDVMYNNEMFQSSFVGNQGCLSASLGHVVPSSGCMWNF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1806 351 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Lal13g1806 351 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Lal13g1806 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 324 - -
Lal13g1806 351 Gene3D NAC domain 28 173 IPR036093 GO:0003677|GO:0006355
Lal13g1806 351 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 14 324 - -
Lal13g1806 351 SUPERFAMILY NAC domain 10 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1806 Lal-Chr13 17555190 17557603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1806 18 202 NAC Transcription Factor Family AT5G07680 64.948 5.86e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal13g1806 NAM 2.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1806 - - lang:109347348 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1806 13 17555190 17557603 Lal13g1806 13 17555190 17557603 ECH
Lal12g1434 12 17534195 17536658 Lal13g1806 13 17555190 17557603 ECH