Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1803 ATGGAAGGTTCCTCAAGTGTTAAAAAAGGTGCATGGACTAAAGAGGAAGATGACCTTCTAAGAGCGTGTGTGCAACAATATGGAGAAGGAAAATGGCACCTTGTGCCTAATCGAGCAGGCTTGAATAGATGTCGCAAAAATTGTAGACTAAGATGGTTGAATTATCTAAAACCAAATATCAACCGAGGAGAGTTCACTGAGGACGAAGTTGATTTGATGATAAGGTTGCATAAACTTCTGGGAAATAGATGGTCTCTCATTGCTGGAAGGCTTCCGGGAAGAACTTCTAATGATGTGAAAAACTATTGGAATACTCATATTCGTAAGAAGGTATCATCTCAAAATGAAGATATTATTAGTGCAAGTCCAATGGAAATAGTGATGGAAGAACCTCATGTTGTGATAAAACCTCAACCTCGGAAAATTTCATCAAATATACCCTTGTTGAGTTATAGTGGAGATCATAGTGGAAACAAAGAGTGCATTACCAATGCTACATCAGAGTGTAATAACAAAGTAAATAATGACACATGCTGTTTGGGTGAGCCAGATTGGATGCTACTGAAAGAACTTAACTGGGGTGAGAACCTTAGTTCATTAACATCAAAATTTGAGGACATTGTTGAGTTAGATCAATGTTGGAATGATGTTCCTTTTGATATCAATTTGTGGGAATCATAA 681 0.373 MEGSSSVKKGAWTKEEDDLLRACVQQYGEGKWHLVPNRAGLNRCRKNCRLRWLNYLKPNINRGEFTEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTHIRKKVSSQNEDIISASPMEIVMEEPHVVIKPQPRKISSNIPLLSYSGDHSGNKECITNATSECNNKVNNDTCCLGEPDWMLLKELNWGENLSSLTSKFEDIVELDQCWNDVPFDINLWES 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1803 226 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Lal13g1803 226 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Lal13g1803 226 CDD SANT 64 107 IPR001005 -
Lal13g1803 226 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 167 - -
Lal13g1803 226 CDD SANT 11 56 IPR001005 -
Lal13g1803 226 Gene3D - 3 62 - -
Lal13g1803 226 Gene3D - 63 125 - -
Lal13g1803 226 SMART sant 61 109 IPR001005 -
Lal13g1803 226 SMART sant 8 58 IPR001005 -
Lal13g1803 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Lal13g1803 226 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Lal13g1803 226 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 167 - -
Lal13g1803 226 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Lal13g1803 226 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Lal13g1803 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1803 Lal-Chr13 17527401 17529636 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1803 2 143 MYB Transcription Factor Family AT1G66370 60.403 2.02e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g1803 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1803 - K09422 lang:109335100 273.478