Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1798 ATGGGAACCTTAGTAGTGAGAAAAGGTGCATGGAATAAGTTGGAAGATGACCTTCTCAGGGCGTGTGTGCAACAATATGGGGAAGGAAAATGGCACCTTGTCCCTAAAAGAGCAGGCTTAAACAGATGCCGCAAAAGTTGTAGACTGCGTTGGTTGAATTATCTTGATCCAAATATTAAGCGAGGAGAGTTCAATGAAGATGAAGTTGACTTGATGTTAAGATTGCATAAACTTTTAGGAAACAGATGGTCTCTCATTGCAGGAAGACTTCCCGGAAGGACTCCAAATGATGTGAAAAACTATTGGAATTCTTACATTCGGAAGAACAAATCCTCTTATAAAGAATGTGTTAATACAAAGCCAAAGGAAACGATAATGGAACCACACGTTGTAATAAAACCTAAACCAAGAACAATCTCAAAAACTTCACCATGGTTTAGAGGGAAATCAATTAGAGAAGATCAAAGTGGGAACAAAAAGTGTAGTACTAGTGAAGCATGTGTTGATGTTTCATTAGAGTTGAATAATAATTATTGGAGTACTTTGGTGGAAGACAAGGGACGCATTGATGAGGACAACACATGTTTGTTGGGTGAAAAAGATAAGGCACTCTTTGAAGATCACCTTAATTGGGATGATGAGATTTTTTCATTAACAACAACAGAGATTGAAGATTTTCTTATTGAAGGTCAAACTTGGAGTGATGTTCTTGATTTCGAAGGGTAG 726 0.376 MGTLVVRKGAWNKLEDDLLRACVQQYGEGKWHLVPKRAGLNRCRKSCRLRWLNYLDPNIKRGEFNEDEVDLMLRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNSYIRKNKSSYKECVNTKPKETIMEPHVVIKPKPRTISKTSPWFRGKSIREDQSGNKKCSTSEACVDVSLELNNNYWSTLVEDKGRIDEDNTCLLGEKDKALFEDHLNWDDEIFSLTTTEIEDFLIEGQTWSDVLDFEG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1798 241 ProSiteProfiles Myb-like domain profile. 7 55 IPR001005 -
Lal13g1798 241 SMART sant 60 108 IPR001005 -
Lal13g1798 241 SMART sant 7 57 IPR001005 -
Lal13g1798 241 CDD SANT 63 106 IPR001005 -
Lal13g1798 241 Gene3D - 62 128 - -
Lal13g1798 241 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 155 - -
Lal13g1798 241 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Lal13g1798 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 55 IPR017930 -
Lal13g1798 241 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 155 - -
Lal13g1798 241 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Lal13g1798 241 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Lal13g1798 241 CDD SANT 10 55 IPR001005 -
Lal13g1798 241 Gene3D - 8 60 - -
Lal13g1798 241 SUPERFAMILY Homeodomain-like 7 102 IPR009057 -
Lal13g1798 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1798 Lal-Chr13 17483622 17488435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1798 6 140 MYB Transcription Factor Family AT1G66370 61.538 3.76e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g1798 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1798 - K16166 lang:109335100 348.206