Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1793 ATGGATGGATCAACTGGCCGGGGTGGTGGTGGAGGCGTGGACATGTTTCTACCAAATTATAAGTTGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAGGTGAAAATTGCAGAGCATGTATTGACCGGTCATAAAGTTGCCATTAAGATCCTTAACCGCCGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGGGAAATCAAAATTTTAAGATTATTCATGCACCCTCATATTATACGACTTTATGAGGTCATAGAAACCCCAACAGACATATATGTGGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTATATAGTAGAAAAGGGTAGGTTGCAAGAAGATGAAGCCCGCAATTTTTTTCAGCAGATTATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATCTGAAGCCTGAGAATTTACTTTTGGACTCTAAATGTAATGTGAAGATTGCTGATTTTGGCTTGAGCAATATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGCGGAAGTCCTAACTATGCTGCTCCAGAGGTCATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGTTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTCCCCTTTGATGATGAAAACATTCCGAACCTCTTCAAGAAAATAAAGGGTGGGATTTACACTCTTCCAAGTCATCTGTCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTGGATCCTATGAAGAGGATGACTATACCTGAGATACGTCAACATCCATGGTTCCAAGCACGTCTTCCACGATATTTAGCAGTGCCACCACCTGATACAATGCAGCAAGCCAAAAAGATTGATGAAGAGATTCTTCAGGAAGTAGTTAATATGGGATTTGACAAGAATCAATTGGTGGAATCTCTTCGCAACAGGCTACAAAATGAGGGTACTGTAGCATACTATTTGTTATTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGTGGAAAAGGACTCCCATGCCGGGATGAGGCAAGAGACTGGGTCAGACTTGCCAGGAGAGATGCAGCGTGAAGAGGCGCGTGCTGCTGCGGCTGGAGAGTTGTCAGCGTTGTATGTCTGGGATGGTGTGTGCACACCGGTGAAAGGAGGCGTACAGTGGTGGATTATGGAGCGGCAGGTGGCTGATTCGGGCTTCAATCGTATCCATTCCAGTGAAGTTGCTTCTCCAGTTATTGGGAACCGCTTTCCAGGGTATATTGATTATCAAGGAGTAGGAATGAGGCCACAGTTCCCTGTTGAGAGAAAATGGGCGCTTGGGCTTCAGTCTCGAGCCCATCCCCGTGAAATAATGACCGAGGTCCTTAAAGCTCTGCAAGAGTTGAATGTTTGTTGGAAGAAGATTGGACACTACAACATGAAGTGCAGATGGGTTGCTGGCAATCCTGGTCATCTCGAAGGAATGGTTAACAATTCTGTTCATGATAATCATTACTTTGGAAATGATTCCACCATTATTGAGAATGATTCTGTTTCTAAATCAAACGTGGTCAAGTTTGAAGTGCAGCTTTACAAAACTCGCGAAGAGAAGTATCTGCTTGATCTTCAAAGGGTCCAGGGTCCACAGTTTCTTTTCTTGGATCTTTGTGCTGCTTTTCTCGCTCAGCTTCGCGTTCTCTAG 1731 0.4402 MDGSTGRGGGGGVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDKNQLVESLRNRLQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMVEKDSHAGMRQETGSDLPGEMQREEARAAAAGELSALYVWDGVCTPVKGGVQWWIMERQVADSGFNRIHSSEVASPVIGNRFPGYIDYQGVGMRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAGNPGHLEGMVNNSVHDNHYFGNDSTIIENDSVSKSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1793 576 PANTHER SERINE/THREONINE KINASE 9 305 - -
Lal13g1793 576 PANTHER SERINE/THREONINE KINASE 419 575 - -
Lal13g1793 576 CDD STKc_AMPK_alpha 17 272 - -
Lal13g1793 576 CDD UBA_SnRK1_plant 294 334 - -
Lal13g1793 576 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Lal13g1793 576 SUPERFAMILY KA1-like 329 575 IPR028375 -
Lal13g1793 576 Gene3D Transferase(Phosphotransferase) domain 1 12 355 - -
Lal13g1793 576 SMART uba_6 295 332 IPR015940 -
Lal13g1793 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Lal13g1793 576 Pfam Kinase associated domain 1 533 575 IPR001772 -
Lal13g1793 576 SUPERFAMILY UBA-like 283 331 IPR009060 GO:0005515
Lal13g1793 576 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 527 575 IPR001772 -
Lal13g1793 576 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 305 - -
Lal13g1793 576 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 419 575 - -
Lal13g1793 576 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1793 576 SUPERFAMILY Protein kinase-like (PK-like) 17 287 IPR011009 -
Lal13g1793 576 Gene3D Kinase associated domain 1, KA1 457 574 - -
Lal13g1793 576 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 333 IPR015940 -
Lal13g1793 576 CDD AMPKA_C 451 573 - -
Lal13g1793 576 Pfam UBA/TS-N domain 294 330 IPR015940 -
Lal13g1793 576 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1793 576 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1793 Lal-Chr13 17418539 17426859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1793 20 272 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 9.23e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Lal13g1793 Pkinase 1.2e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1793 K07198 - gmx:100796687 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1793 13 17418539 17426859 Lal13g1793 13 17418539 17426859 ECH
Lal13g1793 13 17418539 17426859 Lal24g1361 24 14885357 14891826 LSH