Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1791 ATGGGTTGCATTAACTCTAAGAATGTGGTTGCTAAATTTTCTTTGCCACCAATTGTTGAAGATCAACATAGTGTAGCTGGAACCATTGTAGAAAGTGGTCATCACCATCATGGTAATCATAGTTCAAGGGCTCATTCAGGGGTGGTGGTTTTGTCATCAGAGGAAAGGAAGAAGTTGAACAAAAATAGCTCAAAGAAAAGTAAAGGCTCTTTCAGCTTTAGGATTGGATTCTCAAATCATAGGTATGTGGATGCTGAATTGAATGCTGCTGGGTGGCCACCTTGGTTAACAGCTTCGGCTGCAGAAGCTATTCATGGATTGATTCCTCTCAAAGCTGAATCTTTTCAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTGTTCCAAGCACGCGAAGTTGAAAGTGGGAGGATGTTTGCTCTGAAGAAGGTGCGGTTCGACAACTTACAACCTGAAAGCATTAGGTTCATGGCAAGAGAAATAACAATTCTTCGTAGGCTTGACCACCCAAACATCATGAAATTGGAGGGTATCATTACTTCCAGACTATCAAACAGCATTTACCTTGTATTTGAATACATGGAGCATGATCTTGCCGGTCTTGTTTCTCACCCTGACATCATGTTCACTGAGTCAGAGATAAAATGTTACATGATGCAGTTATTAAGTGGAATTGAGCATTGTCACCTACGTGGTATTATGCATCGAGATATTAAAGTATCGAATATCTTAGTGAATAATGAAGGTGTTCTCAAGATAGGAGATTTCGGATTAGCAAATACAATTAGTCCAAATAACAAGCATCCTTTAACCAGCCGTGTAGTGACTCTATGGTATCGCCCTCCCGAGCTCTTGATGGGATCAACTAGTTATGGCGTATCGGTGGATCTGTGGAGTGTTGGCTGTGTATTTGCTGAACTTTATCTCCATAAGCCTATTCTTAAGGGGAGAACTGAGGTTGAACAGCTGCACAAAATTTTTAAGCTTTGTGGTACTCCACCGGATGATTACTGGAAGAAGTTTAAGCTTCCACATGCAACAATGTTCAAACCTCAGACTACTTACGAAAGCTCCCTCCGGGAGAGGTGCACGGATTTTCCTGAAACCGCTGTAAGCCTGCTTGAGACTTTTCTGTCAATTGACCCCTACAAGCGCGGGACTGCCTCCTCTGCCTTAATGTCTGAGTATTTCAACACCATGCCGTATGCCTGTAGTCCATCAAAACTGCCGAAGTATCCACCTAGCAAAGAAATGGATGCTAAAAATCGGGGAGATGCGTCCAGGAAAAAGACCGGAGGTAAAACACGAGAGGCTGTAACATCAAGAAGGCAGCAAAGACGAATCTATAATGTTGTTCAAGAACCGAAGAATTTCAATAAAACAGCTTCAAAAGAGGACATGCAGAATATTCCTCAGAATAGTGGTAAGGATAAGGATGATGGTAAAGGACATCTTACAAAGGGAAAAGGAGGAGGGGCTATGCATAAAGAGCAACCTAAACATTCAATGGATACAATGTCGGATGCTTCTCAAAATATGAATATTGCTGATAACGGAAAGGGCTATAGTGTGCACTCAGGACAAGTCCAACCCCCGGGATCTAGTGGCTTTACATGGGCAAAAAGGAGAAAACCGGATGCTTCATCCGCACTATCGGATGGTGAAAGAAGCAAAATTAGTGCATTGGATCCGAACTTTGCGAAAGGCACATATGACTTGACCAGGCAAGCGATTTTGGAACGAAAATATAATGACAATAATGTACTACAAAAGCACCAGGCTCAACATGGTCAACCAAAGGTGCAAATGGATTTTGATCCAGCAGAACTGCTAAATGCGCAGGGCTACAAAGAATATGGTGCATATTGGAACGAAAATAGTCTGCGGCATGGTAAATCGAGGTTTGGAAGAGACAAATGA 1926 0.4221 MGCINSKNVVAKFSLPPIVEDQHSVAGTIVESGHHHHGNHSSRAHSGVVVLSSEERKKLNKNSSKKSKGSFSFRIGFSNHRYVDAELNAAGWPPWLTASAAEAIHGLIPLKAESFQKLEKIGQGTYSSVFQAREVESGRMFALKKVRFDNLQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSHPDIMFTESEIKCYMMQLLSGIEHCHLRGIMHRDIKVSNILVNNEGVLKIGDFGLANTISPNNKHPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELYLHKPILKGRTEVEQLHKIFKLCGTPPDDYWKKFKLPHATMFKPQTTYESSLRERCTDFPETAVSLLETFLSIDPYKRGTASSALMSEYFNTMPYACSPSKLPKYPPSKEMDAKNRGDASRKKTGGKTREAVTSRRQQRRIYNVVQEPKNFNKTASKEDMQNIPQNSGKDKDDGKGHLTKGKGGGAMHKEQPKHSMDTMSDASQNMNIADNGKGYSVHSGQVQPPGSSGFTWAKRRKPDASSALSDGERSKISALDPNFAKGTYDLTRQAILERKYNDNNVLQKHQAQHGQPKVQMDFDPAELLNAQGYKEYGAYWNENSLRHGKSRFGRDK 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1791 641 MobiDBLite consensus disorder prediction 446 472 - -
Lal13g1791 641 ProSiteProfiles Protein kinase domain profile. 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1791 641 MobiDBLite consensus disorder prediction 409 509 - -
Lal13g1791 641 MobiDBLite consensus disorder prediction 416 445 - -
Lal13g1791 641 SUPERFAMILY Protein kinase-like (PK-like) 110 404 IPR011009 -
Lal13g1791 641 MobiDBLite consensus disorder prediction 473 505 - -
Lal13g1791 641 Gene3D Phosphorylase Kinase; domain 1 107 197 - -
Lal13g1791 641 Gene3D Transferase(Phosphotransferase) domain 1 198 439 - -
Lal13g1791 641 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Lal13g1791 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Lal13g1791 641 CDD STKc_CDK9_like 115 399 - -
Lal13g1791 641 SMART serkin_6 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1791 641 Pfam Protein kinase domain 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1791 641 PANTHER CYCLIN-DEPENDENT KINASE 35 580 - -
Lal13g1791 641 PANTHER CELL DIVISION PROTEIN KINASE 35 580 - -
Lal13g1791 641 MobiDBLite consensus disorder prediction 535 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1791 Lal-Chr13 17395078 17399944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1791 112 441 Core Cell Cycle Gene Families AT5G10270 45.217 7.87e-102 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal13g1791 Pkinase 1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1791 - - lang:109347355 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1791 13 17395078 17399944 Lal13g1791 13 17395078 17399944 ECH
Lal12g1427 12 17446170 17462613 Lal13g1791 13 17395078 17399944 ECH
Lal12g1427 12 17446170 17462613 Lal13g1791 13 17395078 17399944 LSH
Lal13g1791 13 17395078 17399944 Lal24g1357 24 14839863 14845789 LSH