Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1777 ATGGCAACTGCAAAGACAGTGAAAGATGTTTCTCCTCACGAGTTCGTCAAGGCCTATTCCTCTCATCTCAAGCGTTCTGGAAAGATAGAGCTTCCAGAGTGGACAGATATTGTGAAAACTGCCAAGTTTAAGGAGCTGGCTCCCTATGATCCTGACTGGTATTATATTAGAGCTGCCTCCATGGCAAGGAAGATCTACTTGAGGGGTGGCCTTGGCGTTGGCGCCTTTAGGAGGATCTATGGTGGAAGCAAGAGCAATGGAAGTCGTCCCTCACATTTTTGCAAGAGCAGCGGTGGTATTGCTCGACACATTCTTCAACAGCTGGAAATCGTGAAAATTGTTGAGATTGACCCCAAAGGAGGTAGGAGAATCACTTCTAACGGTCGAAGGGATCTTGATCAAGTTGCGGGGCGAATAGTGATTGCTCCTTGA 432 0.4745 MATAKTVKDVSPHEFVKAYSSHLKRSGKIELPEWTDIVKTAKFKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKSNGSRPSHFCKSSGGIARHILQQLEIVKIVEIDPKGGRRITSNGRRDLDQVAGRIVIAP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1777 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lal13g1777 143 Gene3D - 1 142 IPR036388 -
Lal13g1777 143 PANTHER 40S RIBOSOMAL PROTEIN S19-1-RELATED 3 141 - -
Lal13g1777 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lal13g1777 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
Lal13g1777 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lal13g1777 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 141 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1777 Lal-Chr13 17307438 17309227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1777 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 86.713 2.35e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1777 K02966 - fve:101297360 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1415 12 17327161 17329083 Lal13g1777 13 17307438 17309227 LSH
Lal13g1777 13 17307438 17309227 Lal24g1347 24 14759712 14761917 LSH