Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1760 ATGAGTGAGCAAAGGAACCGGTGTCTGCATATCAATATTTCCGGGGCATCTGAACTTAAGAGAGAGGCTGGTTTGTGGAGGCTGTGGGATTTCTGCAAGCTTATGGTGCTGTTGGAGGTTCCTTCTCTCAAATCATGCATTTTTGACGATTTTGAAGATTACGTAAATCCAAATAGTTCTGTGTATAGGAACTGTGTGTGTCTGAGTTGCTTTATACAGAACCTGTTGACTGTGTATGCAGCAATATTCCGTAGAGGGGAAGTGCATTCAGTTCCTTCATCTCTTCAAGGGGCAGCATCCATGTCCTCTACAGCATCACTTGACAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTACCTTATGATGCAGAACCAAGGTATTTCCGCTCAAGGCGTGAGAAGGGTTCAAGTCATTTGAATGAGGAATCAGAACCTCTAAGAAGTGACGTAGATAACGATCCAGAATCTTTAAGTTCAGGAGACAAATGGAATGAATGTGCCGGTGAGGATGGATCAAAGGAATATCGTTCCAAGTCGTCACTAAAACTTTCATCAGCAAAATATACAACTGGAGTCGGGGTTGTCTATGCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACCAAAGAGAATCCAAAGATAATGACTAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGGAGTGACAACTGTCCAGTTTGTGGAAAGGTGATGGTATTTGAAGAAACACTTCCTCTTGATTAA 786 0.4237 MSEQRNRCLHINISGASELKREAGLWRLWDFCKLMVLLEVPSLKSCIFDDFEDYVNPNSSVYRNCVCLSCFIQNLLTVYAAIFRRGEVHSVPSSLQGAASMSSTASLDNSLSDMYRSPPRPLPYDAEPRYFRSRREKGSSHLNEESEPLRSDVDNDPESLSSGDKWNECAGEDGSKEYRSKSSLKLSSAKYTTGVGVVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFEETLPLD 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1760 261 MobiDBLite consensus disorder prediction 135 176 - -
Lal13g1760 261 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 47 257 - -
Lal13g1760 261 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 47 257 - -
Lal13g1760 261 Pfam RING-H2 zinc finger domain 203 248 IPR024766 GO:0008270
Lal13g1760 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 253 IPR013083 -
Lal13g1760 261 SMART ring_2 208 248 IPR001841 -
Lal13g1760 261 MobiDBLite consensus disorder prediction 110 129 - -
Lal13g1760 261 ProSiteProfiles Zinc finger RING-type profile. 208 248 IPR001841 -
Lal13g1760 261 SUPERFAMILY RING/U-box 203 254 - -
Lal13g1760 261 MobiDBLite consensus disorder prediction 135 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1760 Lal-Chr13 17179024 17183724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1760 49 256 C3H Transcription Factor Family AT5G38895 58.852 2.57e-88 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1760 - - gmx:100777068 371.703