Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1759 ATGAATAGATTTAGCAAGAAAGTAGCTATAGGTAAGAAAATGGGGAGAGGAAGGGTTCAGTTGAAGCAGATCGAGAACAAAACAAGCCGGCAAGTAACGTTTTCAAAGAGAAGATCAGGGTTGAGAAAGAAAGCACATGAAATCTCTGTGCTTTGTGATGCTCAAGTTGCATTGATTGTGTTCAACAACAAAGGCAAACTTTTTGAGTTTTCTTCTGAAAGCAGCATGAAAATCATCCTGGAGCGATATGAGAGACATGCCCATGCAGCACAACCTGATGGTGCTGATAATGAATCACAGGGAAACTGGTCCTTGGAATGCTTCAAGCTTACCAACAAAGTTGAGGTATTGGAGAGGAATTTAAGGAACTATGTGGGACATGATTTGGATCCCTTGAGTTTGAGAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACATAGCAATAAAGCGTGTCCGAAACAGAAAGAACCAACTTATGAATGAATCCATCTCTGAGCTGCATAAAAAGATTAAGGAGAAAGAGAAGACACACACAGAAAGTCAACATTGTTGGCCTGAAACTCTAGGCCAAAATTCTTCATCCTTCAATTTATGTCCTCCAAATTTACAATCTCCAGAAAGAATGGTTCCTTCTCTAACTCTTGGATTATAA 651 0.4009 MNRFSKKVAIGKKMGRGRVQLKQIENKTSRQVTFSKRRSGLRKKAHEISVLCDAQVALIVFNNKGKLFEFSSESSMKIILERYERHAHAAQPDGADNESQGNWSLECFKLTNKVEVLERNLRNYVGHDLDPLSLRELQSLEQQLDIAIKRVRNRKNQLMNESISELHKKIKEKEKTHTESQHCWPETLGQNSSSFNLCPPNLQSPERMVPSLTLGL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1759 216 ProSiteProfiles K-box domain profile. 100 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal13g1759 216 Coils Coil 134 176 - -
Lal13g1759 216 PANTHER MADS BOX PROTEIN 14 215 - -
Lal13g1759 216 ProSitePatterns MADS-box domain signature. 16 70 IPR002100 GO:0003677|GO:0046983
Lal13g1759 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 70 IPR002100 GO:0003677|GO:0046983
Lal13g1759 216 CDD MADS_MEF2_like 15 91 IPR033896 GO:0000977|GO:0045944
Lal13g1759 216 SUPERFAMILY SRF-like 15 93 IPR036879 GO:0003677|GO:0046983
Lal13g1759 216 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Lal13g1759 216 Pfam K-box region 98 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal13g1759 216 Gene3D - 26 97 IPR036879 GO:0003677|GO:0046983
Lal13g1759 216 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Lal13g1759 216 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 14 215 - -
Lal13g1759 216 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Lal13g1759 216 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Lal13g1759 216 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1759 Lal-Chr13 17170591 17178127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1759 14 172 MADS-box Gene Family AT1G26310 62.577 7.48e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal13g1759 K-box 9.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1759 K09264 - gmx:100786580 268.855