Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1758 ATGGGTAGAGGAAGAGTGGAACTGAAAAGAATAGAGAACAAGATAAACAGGCAAGTAACATTTGCAAAGAGAAGGAATGGACTTTTGAAGAAAGCTTATGAACTTTCAGTTCTTTGTGATGCTGAGGTTGCCCTTATCATCTTCTCTACACGTGGAAAACTCTATGAGTTTTGTAGCTGCACTTCTGGAATGCTCAAAACACTTGAAAGGTACCAAAAATGCAGCTATGGTGCAGTGGAAGTTAACAAGCCTTCCAAAGAGCTTGAGCAGAGTAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAGAGTCTTCAAAGGACCCAAAGAAACCTTCTAGGTGAAGACTTGGGCCCATTAAACACCAAAGATCTTGAGCAGCTTGAGAGGCAACTGGATTCATCTCTCAAACATGTTAGGTCCACTAAGACCCAATTCATGCTGGACCAGTTATCTGATCTTCAAAATAAGGAACAAATGCTGGTAGAAACAAACAGAGGTTTGGCCATGAAGCTGGAAGAAATCAATTCAAGAAACCAATACAGACAATGGGATGAAGGTGAACAAAGTATGCAATATGATACACAAAATGCTCACTCTCAAGGCTTCTTCCAACCTTTGGAATGCAATCCTACATTGCAGATAGGAACTGATTACAGGTATCATCATGTAGCCCAAGATCAGTTAAATGCAACAACTCAAACTCAACAAGTGAATGGATTTATACCTGGATGGATGCTTTGA 747 0.4043 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSCTSGMLKTLERYQKCSYGAVEVNKPSKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKHVRSTKTQFMLDQLSDLQNKEQMLVETNRGLAMKLEEINSRNQYRQWDEGEQSMQYDTQNAHSQGFFQPLECNPTLQIGTDYRYHHVAQDQLNATTQTQQVNGFIPGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1758 248 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Lal13g1758 248 Coils Coil 126 146 - -
Lal13g1758 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal13g1758 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal13g1758 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal13g1758 248 PANTHER MADS BOX PROTEIN 1 232 - -
Lal13g1758 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal13g1758 248 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Lal13g1758 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal13g1758 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 232 - -
Lal13g1758 248 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal13g1758 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal13g1758 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal13g1758 248 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lal13g1758 248 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1758 Lal-Chr13 17152508 17159269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1758 1 248 MADS-box Gene Family AT5G15800 71.970 1.69e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal13g1758 K-box 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1758 K09264 - gmx:100785322 430.254