Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1753 ATGGCCGCAATTTGCATGACAATGGCTGCAATTGCAGTAGTGCAACAGTTACCGCAACCACAATTTAAAACATTGTTCTGGTGGACTGTGGAGGTTGCTTTAAGATTTGGAAACTTGAACATAAATCACAAATGCCATAGCATTTGTTCACTAAACTTCTCTTGTGATCTTATTAAAGTAATGAGGCTTGTTATCTTAGTTCTTTGTGTTCTTGTGCTATTCTCTTGTGCAGGTGCTTATGATCCCTTGGATCCAACCGGAAACATTACAATCAAATGGGATGTTATGTCTTGGACAGCAGATGGCTATGTGGCAACAGTGACAATGTACAACTTCCAAATGTTTCGGCACATCGTATATCCCGGGTGGACATTGGGATGGACATGGGCAAAGAAAGAAGTTATATGGTCAGCAGTAGGGTCTCAAACCACAGAACAAGGAGATTGCTCAAAGTTCAAAGGAAACATACCACATTGCTGCAAGAAAACTCCTATAGTTGTAGACTTGCTCCCTGGTGTACCCTACAATCAACAATTCACAAATTGTTGTAAGGGTGGAGTGGTATCAGCATGGGGCCAAGATCCTTCACAAGCTATCTCCTCTTTTCAATTGAGTGTTGGTCAAGCTGGTACCTCAAACAAGACAGTTAAACTCCCCAAGAATTTCACTCTCTTGGCTCCTGGACCTGGCTATACTTGTGGCCCTGCAAAGATTGTTCCCTCCACCAGTTTCCTTACACCCGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACCTGCACATACTCACAATTTCTTGCAAGAAAGAATCCAAGTTGTTGTGTATCTTTGTCATCTTTCTACAATGACACCATCACCCCTTGTCCCTCTTGTGCCTGTGGCTGCCAGAACAGGAAGAATTGTGTGAAGAGTGAGTCCAAAATAGTGAGCATGGTGGGAATTCATACACCAAAGAAAGACAATGAACCATTGCTTCAGTGTACTCATCATATGTGTCCAATAAGGGTTCATTGGCATGTGAAACAAAACTATAAGGACTATTGGAGAGTCAAGATTGCTATAACAAATTTCAACTATAGGATGAATTATTCATTATGGGCTCTTGCTATTCAACATCCAAATCTTAACAATGTCACTCAAGTCTTCAGCTTTGATTACAAGCCTTTGGTCCCCTATGAATCCATAAATGACACTGGCATGTTCTTTGGCATGAAATACTTTAATGATCTATTAATGGAAGCTGGACCAAGTGGCAATGTTCAATCAGAGGTGCTTCTTCAGAAGAACATGGATACCTTCACATTCAAGCAAGGTTGGGCATTTCCTCACAAAGTCTATTTTAATGGTGATGAATGCATGCTTCCTCCACCAGATACTTACCCTTTTCTCCCTAATTCTGCCCCTCCAAGCATACTTACTTTCCCACCATTCATTTTCTCTATGCTTTTCTTCTTAGCAATTTGGTTCATTGAGTCATAA 1488 0.412 MAAICMTMAAIAVVQQLPQPQFKTLFWWTVEVALRFGNLNINHKCHSICSLNFSCDLIKVMRLVILVLCVLVLFSCAGAYDPLDPTGNITIKWDVMSWTADGYVATVTMYNFQMFRHIVYPGWTLGWTWAKKEVIWSAVGSQTTEQGDCSKFKGNIPHCCKKTPIVVDLLPGVPYNQQFTNCCKGGVVSAWGQDPSQAISSFQLSVGQAGTSNKTVKLPKNFTLLAPGPGYTCGPAKIVPSTSFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNDTITPCPSCACGCQNRKNCVKSESKIVSMVGIHTPKKDNEPLLQCTHHMCPIRVHWHVKQNYKDYWRVKIAITNFNYRMNYSLWALAIQHPNLNNVTQVFSFDYKPLVPYESINDTGMFFGMKYFNDLLMEAGPSGNVQSEVLLQKNMDTFTFKQGWAFPHKVYFNGDECMLPPPDTYPFLPNSAPPSILTFPPFIFSMLFFLAIWFIES 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1753 495 Pfam COBRA-like protein 103 266 IPR006918 GO:0010215|GO:0031225
Lal13g1753 495 PIRSF COBRA 53 494 IPR006918 GO:0010215|GO:0031225
Lal13g1753 495 PANTHER PROTEIN COBRA 65 489 IPR006918 GO:0010215|GO:0031225
Lal13g1753 495 PANTHER COBRA-LIKE PROTEIN 65 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1753 Lal-Chr13 17082923 17085752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1753 61 490 COBRA Gene Family AT3G29810 64.465 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1753 - - gmx:100798678 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1753 13 17082923 17085752 Lal24g1328 24 14587551 14590481 LSH
Lal13g1753 13 17082923 17085752 Lal6g1582 6 18323429 18335001 PCT
Lal22g1278 22 15447454 15452198 Lal13g1753 13 17082923 17085752 PCT