Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1752 AGGCAGAGCCCAACTTTCCAGTTGTCATGGGCCAAAAGATGTCGTTTAGTGAAATGTAACCCTTCGCCTGAAGCTTATGATCCACTTGACCCAAATGGAAATATCACAATAAAATGGGATGTTATGAGCTGGACAGCTGATGGCTACGTTGCTGTTGTTACGGTGAACAACTTCCAACAATATCGTCATATCTCAGCACCTGGGTGGTCAATCGGATGGACATGGGCAAAGAAGGAGGTAATATGGTTCATGGCGGGAGGGCAGACTACGGAACAAGGGGATTGTTCGAAATTTAAGGAAAACATCCCACATTGCTGTAAAAAGGACCCAACAGTTGTAGATTTACTTCCCGGAACACCTTACAATCAACAAATTGCTAATTGCTGCAAAGGTGGTGTACTCAGCTCATGGGCACAGGATCCGATCAATGCAGTTGCAGCATTTCAACTCAGTGTTGGTAGTGCTGGAACCACGAACAAAACAGTCAGAGTGCCGAAAAACTTCACCTTGAAAGCACCGGGACCAGGGTATACTTGTGGGCCAGCGAAGATTGTGACACCAACTCAATTCAGATTAGGAGACAAAAGGAGAGTGACCCAAGCATTCATGACATGGAATGTGACATGCACATATTCACAATTTCTAGCTCAGAGAACTCCCACTTGTTGTGTCTCCCTCTCATCTTTCTACAATGATACTATAGTACCGTGCCCAACATGTTCATGCGGCTGCCAGGGAAACTCGGCTCAATTGGGAAATTGTGTAGATCCAGATTCACCACATTTGGCATCGATTGTTTCCAATACCGGAAAGAATAGTCTCACACCTTTGGTTCAGTGCACACGTCATATGTGTCCAATCAGAGTTCACTGGCACATTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTTACTGTTACTAATTTCAATTACAGGATGAACTATTCTGACTGGAACTTGGTTATTAAACACCCGAACTTTGACAACCTGACCCAACCTTTCAGTTTCAACTACAAGTCAATAACTCCCTATGGGACAATAAATGATACAGCAATGCTTTGGGGAATTAAGTTCTACAATGATTTTCTCATGCAAGCTGGCCCTATTGGCAATGTACAATCAGAGCTACTTTTCCGAAAGGATAAATCAACTTTTACTTTTGAGAAGGGTTGGGCTTTTCCAACAAGGATCTATTTCAATGGTGACAACTGTGTGATGCCACCACCTGATGCTTATCCATGGTTACCTAACACCGGTTCCCGACAAGAGCCTTCGGTGCTTGCTATGGTCATGGTTTCCTTGGTAGCCTTGTTATTTGAAGCATATGCATAA 1335 0.4375 RQSPTFQLSWAKRCRLVKCNPSPEAYDPLDPNGNITIKWDVMSWTADGYVAVVTVNNFQQYRHISAPGWSIGWTWAKKEVIWFMAGGQTTEQGDCSKFKENIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPINAVAAFQLSVGSAGTTNKTVRVPKNFTLKAPGPGYTCGPAKIVTPTQFRLGDKRRVTQAFMTWNVTCTYSQFLAQRTPTCCVSLSSFYNDTIVPCPTCSCGCQGNSAQLGNCVDPDSPHLASIVSNTGKNSLTPLVQCTRHMCPIRVHWHIKLNYKEYWRVKVTVTNFNYRMNYSDWNLVIKHPNFDNLTQPFSFNYKSITPYGTINDTAMLWGIKFYNDFLMQAGPIGNVQSELLFRKDKSTFTFEKGWAFPTRIYFNGDNCVMPPPDAYPWLPNTGSRQEPSVLAMVMVSLVALLFEAYA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1752 444 Pfam COBRA-like protein 49 212 IPR006918 GO:0010215|GO:0031225
Lal13g1752 444 PANTHER COBRA-LIKE PROTEIN 18 442 - -
Lal13g1752 444 PIRSF COBRA 4 444 IPR006918 GO:0010215|GO:0031225
Lal13g1752 444 PANTHER PROTEIN COBRA 18 442 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1752 Lal-Chr13 17079088 17082641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1752 24 442 COBRA Gene Family AT3G02210 76.667 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1752 - - gmx:100783820 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1752 13 17079088 17082641 Lal24g1326 24 14584071 14587373 LSH
Lal13g1752 13 17079088 17082641 Lal22g1278 22 15447454 15452198 PCT
Lal22g1279 22 15450688 15454780 Lal13g1752 13 17079088 17082641 PCT