Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1751 ATGCCTCATCAAGTTCATTTACTTATCATTGGCGTCACTTTCGGTTTGGTCCTTGGAATTCTGATTGTTTGCCTCATATTTTTCTGCATAAGGTGCTATAAGAAAGACAGTAATATCAGACAATCTGCTAATGATGCTAGTGTAACTACTGATACTAGTGTAACAACTCTTCCGATACGAACAAATGGATTGGAAACGAGTATTGACTTTAGTGCATCTATTACTAGTTCCACAACCATGTCAAGGTCAGAAAATGTACAGAAAGATTCCAATTTCAGTTGTTGGAGTCGTCAAAGCAAAGATCGATTTGCTAAATCACCGGGCATTCCTAAGTACTCATACAAAGAAATTCAAAAGGCCACACAAAATTTCACAACTAGGCTGGGACAAGGGTCTTTCGGCACAGTTTATAAGGCCACAATGCCAACAGGAGAGGTGGTAGCTGTGAAAGTGCTTGCATCTAATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTGCTTCTGCTAGGAAGGCTGCATCATCGGAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGACAGCGCATACTGGCTTATCAGTTCATGAGTAATGGAAGTTTAGAAAATATTCTATATGGTGAAGAAAGGAAATTGAGTTGGGATGAAAGGTTGCAAATTGTTTTTGATATTTCACATGGGATAGAATACCTTCATGAAGGAGCTGCTCCACCCGTCATACATCGCGATTTGAAATGTGCCAACATATTGCTAGATCACTCAATGAGAGCTAAGGTTGCTGATTTTGGACTCTCAAAGGAAGAGGTATTTGATGGTCGGAATTCTGCACTTAAAGGTACATATGGCTACATGGATCCAGCATACATTTCGACAAACAAGTTAACAATGAAGAGTGACATCTACAGTTTCGGTATCATAATCTTCGAACTCATCACTGCTATCCCCCCACATCAAAATCTGATGGAATATATTGGCCTTGCTGCAATGGATCATGATGGCATAGATGGTATACTTGACAAGCAACTTGTGGATAACTGCAACATTGGAGAAGTGAGACAGCTTGCGAAAATCGGACACAAATGTTTGCACAAATCACCGAGGAAACGCCCTCCAATAAGTGTAGTTTCACAGGGTATATCGAGTATAAAGCAGAGGCGGCAGCGCCACCACGCGATAGAAGAGATCATGTCACTTGCAAACAGTAGAGCCGAGTCGATGAACAGATCGGTAGATTGA 1242 0.409 MPHQVHLLIIGVTFGLVLGILIVCLIFFCIRCYKKDSNIRQSANDASVTTDTSVTTLPIRTNGLETSIDFSASITSSTTMSRSENVQKDSNFSCWSRQSKDRFAKSPGIPKYSYKEIQKATQNFTTRLGQGSFGTVYKATMPTGEVVAVKVLASNSKQGEKEFQTEVLLLGRLHHRNLVNLVGYCVDKGQRILAYQFMSNGSLENILYGEERKLSWDERLQIVFDISHGIEYLHEGAAPPVIHRDLKCANILLDHSMRAKVADFGLSKEEVFDGRNSALKGTYGYMDPAYISTNKLTMKSDIYSFGIIIFELITAIPPHQNLMEYIGLAAMDHDGIDGILDKQLVDNCNIGEVRQLAKIGHKCLHKSPRKRPPISVVSQGISSIKQRRQRHHAIEEIMSLANSRAESMNRSVD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1751 413 CDD STKc_IRAK 128 379 - -
Lal13g1751 413 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 405 - -
Lal13g1751 413 Pfam Protein kinase domain 126 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1751 413 ProSiteProfiles Protein kinase domain profile. 122 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1751 413 PANTHER OS01G0750732 PROTEIN 9 405 - -
Lal13g1751 413 SMART serkin_6 122 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1751 413 ProSitePatterns Protein kinases ATP-binding region signature. 128 150 IPR017441 GO:0005524
Lal13g1751 413 Gene3D Phosphorylase Kinase; domain 1 82 197 - -
Lal13g1751 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Lal13g1751 413 Gene3D Transferase(Phosphotransferase) domain 1 198 407 - -
Lal13g1751 413 SUPERFAMILY Protein kinase-like (PK-like) 100 377 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1751 Lal-Chr13 17070626 17075133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1751 92 386 Receptor kinase-like Gene Family AT1G79620 41.720 2.62e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lal13g1751 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1751 - - adu:107471361 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1751 13 17070626 17075133 Lal13g1751 13 17070626 17075133 ECH
Lal12g1396 12 17049679 17054724 Lal13g1751 13 17070626 17075133 LSH