Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1746 ATGGATCCAATTCTAAACATATCTCTTTTCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCATCATTCTTATTACCATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAATCTCGCTCCTCCCATCACGATTTCAACATCAACCCCTTTTCCGGTGTCCTTTGCGATCTTCACCACGAACCCCAATTAGGGTTAGGGTTTCAATTTGAAACCCATAACAACAATAATTCTCAACCTAGTGGACTCAGGGTTGTTGATTTCGGTTCCGATTCCGATTCCGATTCTAGTAGCGAGGATGAGCATGATATTGATCGGGTTATGATGAATAATGATGATGATGATGATGATAGGGTTGGTGGATTCGACGATTTCGATGTTCAATTGTGTTGGGATAGTCTTTGTTTAGAGGATCAAAGGACCCTTAATGAGGGTTTTGAATGGGAGGAGGTAGAAGAGAGGGTTAATGAAATTGAGAATGAGAGAGAAGATTTGAGTTTGATGATTGATGAAGTTGATATTAATGATGATGATGATGATGTTGATGATCAATCAGTGGCGTCTGGGTTTTCGAATGTTGATGAACCGAGCGAAGAGGCGCTTAGGTACTTGGAATGGGAAATTCTATTGGCTGTTAATAATTTGGAGAGGAATCCAATTTTGGAACATGATGCCAATGTGGATTCGTATTTGGCGGTTCAGGATGGTTATATATACACAGCTGAGTATGATGTTCTTTTCGGGCAGTTTATGGATAACGAGACTGCATTGAAGGGTAGCCCTCCTGCTGCGAAAAGTGTTATGGAGAATCTTCCTGTGGTGGAATTGTCGAAGGAGGAGTTGCAGATGAAAAATGTGGCGTGCGCTGTTTGTAAAGATGAGATCTTGTTGGAGGAAAAGGTGAGGAGGCTTCCTTGCTTCCATTGTTATCATGGAGATTGCATTATGCCGTGGTTGAGTATCCGTAATACGTGTCCTGTTTGTCGGTTTGAGTTGCCCACTGATGATCCTGATTATGAGCAGAGGAAGAGCCGCCAGGCTGCTAATGATGCTTTGGATTTTTCAACACAGATGCAATTTTGA 1095 0.421 MDPILNISLFQEEEEEEEEEDHHSYYHSDSDSVSCFVTDLFESRSSHHDFNINPFSGVLCDLHHEPQLGLGFQFETHNNNNSQPSGLRVVDFGSDSDSDSSSEDEHDIDRVMMNNDDDDDDRVGGFDDFDVQLCWDSLCLEDQRTLNEGFEWEEVEERVNEIENEREDLSLMIDEVDINDDDDDVDDQSVASGFSNVDEPSEEALRYLEWEILLAVNNLERNPILEHDANVDSYLAVQDGYIYTAEYDVLFGQFMDNETALKGSPPAAKSVMENLPVVELSKEELQMKNVACAVCKDEILLEEKVRRLPCFHCYHGDCIMPWLSIRNTCPVCRFELPTDDPDYEQRKSRQAANDALDFSTQMQF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1746 364 SUPERFAMILY RING/U-box 275 340 - -
Lal13g1746 364 MobiDBLite consensus disorder prediction 83 119 - -
Lal13g1746 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 339 IPR013083 -
Lal13g1746 364 Coils Coil 152 179 - -
Lal13g1746 364 Pfam Ring finger domain 292 333 IPR001841 -
Lal13g1746 364 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 25 364 - -
Lal13g1746 364 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
Lal13g1746 364 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 25 364 - -
Lal13g1746 364 SMART ring_2 292 332 IPR001841 -
Lal13g1746 364 MobiDBLite consensus disorder prediction 103 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1746 Lal-Chr13 17036392 17037486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1746 210 356 C3H Transcription Factor Family AT3G02340 51.250 7.09e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1746 - - gmx:100789524 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1746 13 17036392 17037486 Lal13g1746 13 17036392 17037486 ECH