Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1743 ATGAAGAGGGTTGAAATCATAAGGGAGGATCCTAAAGCAGGTTTAACCGATTCAATTGTTCGTGTCAAGAATGTGACATATGGACTTTGTTTGAAGAATCATTCGATTCACCCATTAGCATATACTATAGATGGGTGCCAAATGTTTACGCCTAGCGGAGAAGAAGGTATCGATGCTAGTCGAACATGTGTTGCTTGTGGTTGCCATAGGGATCACCATAGAAGAGAAGAAACGGAGTCTAAAGTAAAATCTGAGAATTCTTCATCTTCTACAAATAGATCTTAA 285 0.3895 MKRVEIIREDPKAGLTDSIVRVKNVTYGLCLKNHSIHPLAYTIDGCQMFTPSGEEGIDASRTCVACGCHRDHHRREETESKVKSENSSSSTNRS 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1743 94 Pfam ZF-HD protein dimerisation region 24 77 IPR006456 -
Lal13g1743 94 MobiDBLite consensus disorder prediction 71 94 - -
Lal13g1743 94 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 84 - -
Lal13g1743 94 PANTHER MINI ZINC FINGER PROTEIN 2 23 84 - -
Lal13g1743 94 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 27 76 IPR006456 -
Lal13g1743 94 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 27 76 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1743 Lal-Chr13 17010336 17010620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1743 22 92 Zinc finger-homeobox gene family AT3G28917 50.000 2.26e-16 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal13g1743 ZF-HD_dimer 3.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1743 - - twl:119996111 83.5741