Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1742 ATGAAAAGGGTTAATGTTGTAAGGGAGGAACCTCCGACACACTTAACCAATTCGATTGTTCGAGTCAAGATCGTGAGATATGGAATTTGTCTGAAGAATCACTCGATTCATCGCGGAGGATTTGTTATGGATGGGTGTCAAGAGTTTATAGCTAATGGGGAAGAAGGTAGTGATGGTGCTACAAAATGTGCTGCTTGTGGTTGCCATAGGGATCACCATAATAGAATAGAAAGAGAGAGTGAAGTAGAGTGTGAGACAAATGAAGCTTGA 270 0.4148 MKRVNVVREEPPTHLTNSIVRVKIVRYGICLKNHSIHRGGFVMDGCQEFIANGEEGSDGATKCAACGCHRDHHNRIERESEVECETNEA 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1742 89 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 79 - -
Lal13g1742 89 Pfam ZF-HD protein dimerisation region 25 76 IPR006456 -
Lal13g1742 89 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 26 75 IPR006456 -
Lal13g1742 89 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 27 76 IPR006456 -
Lal13g1742 89 PANTHER MINI ZINC FINGER PROTEIN 2 23 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1742 Lal-Chr13 17003397 17003666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1742 22 87 Zinc finger-homeobox gene family AT3G28917 56.716 2.04e-19 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal13g1742 ZF-HD_dimer 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1742 - - tcc:18601512 101.293