Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1740 ATGTTGAAGAACAATATTGGTGTTGGAAGTTCCAACAAGTGGTCACGTGTCTGTGACACGTGCCAGTCTGCAGCATGCATAGTGTACTGTCTTACTGACTCAGTCTACTTGTGCTCACTGTGTGATGCAAAATTTCATGCACCAAATTGTGTGGCTTCATGGCATGAGCGTGTGTGGGTTTGTGAAATTTGTGAACGTGCTCCTGCTGCTTTTCTATGTAAAGCTGATGCTGCTACTCTTTGTTCTTCTTGTGATGCTCACATCCATTCTTCCAACCCTCAAGCTAGCTGCCACCACCGTGTGCCTATTCTACCCATCATTGGATCTCTCCTTGGTCAAGATCATGACATCATAGATCTGAGAGACATGTCTTTAAAATTGAAGCGTGATGGATATGAGGCAGAGAAAGAGGAGGAGGATGAGGTATTCAATGAAGCTGAAGATGTGGCTGAAGCAGCATCGTGGTTGTTGTCGAATCCGGTGCAGAATAGCGACGAAAATGAAGAGAATAATAATATATTCTTGTATGGTGATAATAGTTACAGTGTTGAGGACTATGCAAAGGTTAATGTTGTTCCTGTTCAGATTCCACAACAGTCACAGCACTTTCAACTTGGTTTGGATATTGATTCCTTGGAGTTTGGACTCACTTGCAATGATTCAAGTGTTTCAATTTCAGCAATGGATGTTGTTGGTGTTGTACCAAAATCAACAATGAGTGATGTCTCAATTCCTCATTCAAAACCACTAACAATAGGAACAAGTGAGTTAATTCCTCACATTCAAAGGCCTTTTATCCCAATGGAGAGAGAGGCTAAAGTTCTAAGGTATAAGGAGAAAAAGAAAACAAGAAAGTTTGAAAAGAAAATTATGTATGCTTCAAGGAAGGCCTATGCAGAAACTAGACCTCGTATAAAAGGTAGATTTGTAAAAGAAACTGATGCAGAAGAAGCTGGGTATGGCATTATTCCCTCAGAGCTCTTTCTGAATATTCAGCTAAATAAATGGTGA 1011 0.4045 MLKNNIGVGSSNKWSRVCDTCQSAACIVYCLTDSVYLCSLCDAKFHAPNCVASWHERVWVCEICERAPAAFLCKADAATLCSSCDAHIHSSNPQASCHHRVPILPIIGSLLGQDHDIIDLRDMSLKLKRDGYEAEKEEEDEVFNEAEDVAEAASWLLSNPVQNSDENEENNNIFLYGDNSYSVEDYAKVNVVPVQIPQQSQHFQLGLDIDSLEFGLTCNDSSVSISAMDVVGVVPKSTMSDVSIPHSKPLTIGTSELIPHIQRPFIPMEREAKVLRYKEKKKTRKFEKKIMYASRKAYAETRPRIKGRFVKETDAEEAGYGIIPSELFLNIQLNKW 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1740 336 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Lal13g1740 336 SMART bboxneu5 61 103 IPR000315 GO:0008270
Lal13g1740 336 SMART bboxneu5 13 60 IPR000315 GO:0008270
Lal13g1740 336 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 5 316 - -
Lal13g1740 336 ProSiteProfiles CCT domain profile. 270 312 IPR010402 GO:0005515
Lal13g1740 336 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Lal13g1740 336 CDD Bbox1_BBX-like 17 60 - -
Lal13g1740 336 Pfam CCT motif 270 312 IPR010402 GO:0005515
Lal13g1740 336 Pfam B-box zinc finger 58 102 IPR000315 GO:0008270
Lal13g1740 336 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 316 IPR045281 GO:0009909
Lal13g1740 336 CDD Bbox1_BBX-like 60 103 - -
Lal13g1740 336 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1740 Lal-Chr13 16983354 16985769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1740 11 325 C2C2-CO-like Transcription Factor Family AT3G02380 44.022 3.57e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal13g1740 zf-B_box 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1740 - - lang:109335543 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1740 13 16983354 16985769 Lal13g1740 13 16983354 16985769 ECH