Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1739 ATGTTGAAGAACAATATTGGTGTTGGAAGTTCCAACAAGTGGTCACGTGTCTGTGACACGTGCCAGTCTGCAGCATGCATAGTGTACTGTCTTACTGACTCAGTCTACTTGTGCTCACTGTGTGATGCAAAATTTCATGCACCAAATTGTGTGGCTTCATGGCATGAGCGTGTGTGGGTTTGTGAAATTTGTGAACGTGCTCCTGCTGCTTTTCTATGTAAAGCTGATGCTGCTACTCTTTGTTCTTCTTGTGATGCTCACATCCATTCTTCCAACCCTCAAGCTAGCTGCCACCACCGTGTGCCTATTCTACCCATCATTGGATCTCTCCTTGGTCAAGATCATGACATCATAGATCTGAGAGACATGTCTTTAAAATTGAAGCGTGATGGATATGAGGCAGAGAAAGAGGAGGAGGATGAGGTATTCAATGAAGCTGAAGATGTGGCTGAAGCAGCATCGTGGTTGTTGTCGAATCCGGTGCAGAATAGCGACGAAAATGAAGAGAATAATAATATATTCTTGTATGGTGATAATAGTTACAGTGTTGAGGACTATGCAAAGGTTAATGTTGTTCCTGTTCAGATTCCACAACAGTCACAGCACTTTCAACTTGGTTTGGATATTGATTCCTTGGAGTTTGGACTCACTTGCAATGATTCAAGTGTAAGGATCTTCCTTTCTATGTTTTTTCGAACAAATTTCTCTTTTATCGTCCCCAATTTTCAGCAATGCGATAAACACAACGTAACCATCAAAGTGTAA 765 0.417 MLKNNIGVGSSNKWSRVCDTCQSAACIVYCLTDSVYLCSLCDAKFHAPNCVASWHERVWVCEICERAPAAFLCKADAATLCSSCDAHIHSSNPQASCHHRVPILPIIGSLLGQDHDIIDLRDMSLKLKRDGYEAEKEEEDEVFNEAEDVAEAASWLLSNPVQNSDENEENNNIFLYGDNSYSVEDYAKVNVVPVQIPQQSQHFQLGLDIDSLEFGLTCNDSSVRIFLSMFFRTNFSFIVPNFQQCDKHNVTIKV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1739 254 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Lal13g1739 254 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 5 196 - -
Lal13g1739 254 SMART bboxneu5 61 103 IPR000315 GO:0008270
Lal13g1739 254 SMART bboxneu5 13 60 IPR000315 GO:0008270
Lal13g1739 254 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Lal13g1739 254 CDD Bbox1_BBX-like 17 60 - -
Lal13g1739 254 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 196 IPR045281 GO:0009909
Lal13g1739 254 Pfam B-box zinc finger 58 102 IPR000315 GO:0008270
Lal13g1739 254 CDD Bbox1_BBX-like 60 103 - -
Lal13g1739 254 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1739 Lal-Chr13 16974534 16976451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1739 11 208 C2C2-CO-like Transcription Factor Family AT3G02380 42.667 3.53e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal13g1739 zf-B_box 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1739 - K12135 lang:109335543 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1739 13 16974534 16976451 Lal6g1623 6 18836551 18839503 PCT
Lal6g1623 6 18836551 18839503 Lal13g1739 13 16974534 16976451 PCT