Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1727 ATGGAAGCAGAAGAATCTCACGTTTTTCCGATTGAAGATATGAAAAATGTGGTTGCAACTGTCACTGGTTACCATGGATCTGAGCGCTTCAATCTCATCAAGTTGATTTCATATGCTGGTGCCAGTTATGTTGGGAGAATGGAATCAAAATCAATCACACATCTGGTTTGTTGGAAATTCGAAGGAAAAAAGTTTGATATTGCCCAAAAGCTCAACATAATTGTAGTCAACCACCGATGGATTGAAGATTGCATAAGGGAAGGAAAGCGTGTTCCAGAAGATTCTTATATTTGGCAAAGTGGCCATGAAGCAGGGCCACTGTTACTGAAAGATCCTTCACGCACTGTTCAAGCAAATAGCTTGAAAAGGAAGAAAGTGATTAGTGACAGGTCATATGATATTGGTTCTGAAAAGCAAACAACTGACTTAAGTTCTGGTAGTCAGCACGTGGAGTTAAATTCTCGTTCTTCTAGTCGATTGCGGAAACAAAAAAGAAATATGTGCAGTGATAATGGAGCTAGTACTGTAGCTGGACCTTCTCGTAAAGGTAGAAGGATAGCGAAAAATATTGTAGATGAAGTGGTCTTGGATCCTATCATTTTGGATTTAACTCGGGAAGAGGACCGACTTACCAGAGTAAATAGAGTGCACACTGATGCTGCAGCTACCTCTAGTCATTCTCGTGGTGTCAATAACAAAAATAGTCTAGAAAATAGAGAAGGACCAGATGACAGATTACATAATCAAAGTGGAGCTATCAACATAGCTTCATATGGCATTGAACAGATAATTGATTCAAATAATGTATCTACCAATAGAAATTCAACTTTGTTTGAAGAAGATTCTTTACCTATGGCACAAACATCAGTTTGTTTAAGTGCTGAGAATTTCACAGATAGTAGTCAGATTGATATTGTTGGTGCTTTACCTACTTCAAAAGAGTTGTCATGTGTTATATGTTTCGAAGAGTACAGCTCAACAAGAGGAATTTTGCCGTGTGGACATCGGTATTGTTATACATGCATCCAAAGTTGGGTTGATCTTAGGACTTCAATGGGGAAAAGTTCAACCTGCCCGTTGTGCAAGGCAAGTTTTGTGATGTTCAAGAAAGTTGAGGATGCAGCCACTGGTGATCAAAAAGTATATTCCCAGACAATCCCATCTGGCAATTCAGCCTCAGATATTTTTGTCCGCACGGTTCAAGAATTACCCGATTATGGTTTTGAGTCAGGTTCTTGTGTAGTTTGCCGTGGTCGGGAACCTGAGGATCTGCTCCAAAGTTGTGACGTTTGCCGATGCCGAAGAATCCATCTCTATTGCCTGGACCCTCCTTTACTGCCTTGGACATGCAATCACTGCAAGGATCTTCGGAGGCTTTATCATCATCACTCTTATTAG 1398 0.4027 MEAEESHVFPIEDMKNVVATVTGYHGSERFNLIKLISYAGASYVGRMESKSITHLVCWKFEGKKFDIAQKLNIIVVNHRWIEDCIREGKRVPEDSYIWQSGHEAGPLLLKDPSRTVQANSLKRKKVISDRSYDIGSEKQTTDLSSGSQHVELNSRSSSRLRKQKRNMCSDNGASTVAGPSRKGRRIAKNIVDEVVLDPIILDLTREEDRLTRVNRVHTDAAATSSHSRGVNNKNSLENREGPDDRLHNQSGAINIASYGIEQIIDSNNVSTNRNSTLFEEDSLPMAQTSVCLSAENFTDSSQIDIVGALPTSKELSCVICFEEYSSTRGILPCGHRYCYTCIQSWVDLRTSMGKSSTCPLCKASFVMFKKVEDAATGDQKVYSQTIPSGNSASDIFVRTVQELPDYGFESGSCVVCRGREPEDLLQSCDVCRCRRIHLYCLDPPLLPWTCNHCKDLRRLYHHHSY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1727 465 MobiDBLite consensus disorder prediction 217 248 - -
Lal13g1727 465 ProSitePatterns Zinc finger RING-type signature. 333 342 IPR017907 -
Lal13g1727 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 458 IPR013083 -
Lal13g1727 465 SUPERFAMILY BRCT domain 14 99 IPR036420 -
Lal13g1727 465 SMART ring_2 317 361 IPR001841 -
Lal13g1727 465 SMART BRCT_7 11 88 IPR001357 -
Lal13g1727 465 MobiDBLite consensus disorder prediction 137 154 - -
Lal13g1727 465 MobiDBLite consensus disorder prediction 137 181 - -
Lal13g1727 465 Pfam twin BRCT domain 17 80 IPR001357 -
Lal13g1727 465 ProSiteProfiles Zinc finger RING-type profile. 317 362 IPR001841 -
Lal13g1727 465 SUPERFAMILY FYVE/PHD zinc finger 402 455 IPR011011 -
Lal13g1727 465 Pfam Zinc finger, C3HC4 type (RING finger) 317 361 IPR018957 GO:0046872
Lal13g1727 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 381 IPR013083 -
Lal13g1727 465 PANTHER F5A8.9 PROTEIN 119 462 - -
Lal13g1727 465 PANTHER F5A8.9 PROTEIN 10 129 - -
Lal13g1727 465 ProSiteProfiles BRCT domain profile. 14 98 IPR001357 -
Lal13g1727 465 SUPERFAMILY RING/U-box 309 368 - -
Lal13g1727 465 Gene3D BRCT domain 11 103 IPR036420 -
Lal13g1727 465 MobiDBLite consensus disorder prediction 217 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1727 Lal-Chr13 16860624 16865540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1727 35 96 Core DNA Replication Machinery Family AT4G02110 38.095 1.16e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1727 - - vra:106765083 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1727 13 16860624 16865540 Lal13g1727 13 16860624 16865540 ECH
Lal13g1727 13 16860624 16865540 Lal24g1311 24 14434979 14440770 LSH