Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1717 ATGTACCCTTCTACTTACACTTCCTCAGGCCCTTACCCTTGCTACCCTTCAGCTTCTAATTCATACCCTTTTTTCCCTTTCCTTAACCCTGAAAATGCTTCTTCAAGCAACAACAACAACAACAACCTCACCCTTCTTCACGATCCACTTGTTCATGTTCCTTACAACTTACCAACTCATCATCATATTCATAACACACCTATAATCCAAGAAACACTGACCAATTTGGCTGTTTCTGATGCTGCTGCTACAATGCCGAAACAAGACCCTATTATGAGTGGTGGTGGTGGTGCTCATCATCACTATGGGCTTTCTTCTCTGCTCACAAAGAAACCAGCCAAAAAAGATAGGCACAGTAAAATTTACACCTCTCAGGGCTTGAGGGATCGGAGGGTGAGGCTTTCGATCGAGATCGCACGAAAGTTCTTCGATCTACAAGACATGCTAGGGTTTGACAAAGCAAGCAACACCCTTGAGTGGCTCTTCAGCAAGTCCAAGAGAGCAATTAAGGAGCTAGCTAGAAGCAAGAAAAGCAATGGCAGTGATGGTGATGCTAATAGCTTCTCCTCATCTTCTGTTCGTGAGGACTGTAATGAAGTTATTTCAGGGATCAATAATGAACAACAAGGTATCACCATTACTGATCACGATTCAAATGCTGTGAAAGATGTGAAGAAGTTGAAAAGGGCACAGAAGGAACCGGCTTGTGTTCGAGCAAAGATGAAGGAGTCAAGGGAAAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATGTGCAACACTAACAATGACAATGGGAGGGTAGTTCAAGTGCAAGACTTGAAGAAAAAGTGCATTGCAACAACTGAAAACAACTCTCATACCCTTCAACAATTGAGGTCACCTCTTCAGCTTGAAGACTGTGCAAGATCACCTAATAATAAGCTTCTTCACCCTCACTTTGTGAGTAGTAGTGAAGTACCTAGAGATGACAACTTCAATGTGATTGAGGAATCTATTGTGATCAGGAGAAAGTTGAAGCCTTCAATGATGTCTTCTTCTCATCATCATCATCACCACCAGAACCCAATGATCCCAAAGGAAGCAAGTTTCAACAACAACACTGACTACAACTCCTTCACCAATTTGTCTCCAAATTGGGATAATGCTAATAATGGTGGCAATGGTATTAATGGAAGATCCAACTTTTGTACAATAGCCAGCATGAATCTCTCTACAGTGTTGATTTTTCAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGTAGTGCACACCAATTAAACCACGTCTACACTAGTATCTTCTTTCAGTATTTTCTGATCCAATTGAACTCTCTAGTGCTTTGCCAAGGAATCATGAAGACATCTTTCTATGTTTTCCACAAGTAA 1392 0.4152 MYPSTYTSSGPYPCYPSASNSYPFFPFLNPENASSSNNNNNNLTLLHDPLVHVPYNLPTHHHIHNTPIIQETLTNLAVSDAAATMPKQDPIMSGGGGAHHHYGLSSLLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSKRAIKELARSKKSNGSDGDANSFSSSSVREDCNEVISGINNEQQGITITDHDSNAVKDVKKLKRAQKEPACVRAKMKESREKARARARERTSNKMCNTNNDNGRVVQVQDLKKKCIATTENNSHTLQQLRSPLQLEDCARSPNNKLLHPHFVSSSEVPRDDNFNVIEESIVIRRKLKPSMMSSSHHHHHHQNPMIPKEASFNNNTDYNSFTNLSPNWDNANNGGNGINGRSNFCTIASMNLSTVLIFQGFKSLESLGSSAHQLNHVYTSIFFQYFLIQLNSLVLCQGIMKTSFYVFHK 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1717 463 Pfam TCP family transcription factor 113 262 IPR017887 -
Lal13g1717 463 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 417 IPR005333 GO:0003700
Lal13g1717 463 ProSiteProfiles R domain profile. 242 259 IPR017888 -
Lal13g1717 463 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 20 417 - -
Lal13g1717 463 ProSiteProfiles TCP domain profile. 114 172 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1717 Lal-Chr13 16799802 16801271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1717 110 306 TCP Transcription Factor Family AT1G67260 39.303 2.48e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lal13g1717 TCP 7.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1717 - - lang:109354107 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1717 13 16799802 16801271 Lal19g1416 19 16864961 16866872 ECH
Lal13g1717 13 16799802 16801271 Lal7g1307 7 18425551 18427032 ECH
Lal13g1717 13 16799802 16801271 Lal14g1863 14 18152958 18154429 ECH
Lal13g1717 13 16799802 16801271 Lal13g1717 13 16799802 16801271 ECH