Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1712 ATGGTTGCTGCAAAGAAAACCAAGAAGACCCATGAGAGCATTAACAACAGGCTCGCTCTTGTAATGAAGAGTGGTAAATATACTCTTGGTTACAAAACTGTTCTCAAATCCCTTAGAAGCTCCAAAGGGAAACTCATTATCATTGCCAACAATTGCCCACCCTTGAGGAAGTCAGAAATTGAGTATTATGCTATGTTGGCCAAGGTTGGAGTTCACCATTATAATGGGAACAATGTGGATTTGGGTACTGCGTGTGGCAAATATTACCGAGTGTGCTGCCTCAGCATCGTTGATCCGGGTGATTCGGATATCATTAAGACCATGCCTACCGAGCAGTAA 339 0.4307 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTMPTEQ 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1712 112 Gene3D - 2 108 IPR029064 -
Lal13g1712 112 PANTHER RIBOSOMAL PROTEIN L30 1 112 IPR039109 GO:0003723
Lal13g1712 112 SUPERFAMILY L30e-like 13 107 IPR029064 -
Lal13g1712 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Lal13g1712 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Lal13g1712 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Lal13g1712 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Lal13g1712 112 PANTHER 60S RIBOSOMAL PROTEIN L30 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1712 Lal-Chr13 16756881 16759423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1712 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 86.607 4.62e-71 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1712 K02908 - gmx:100806260 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1382 12 16928400 16930580 Lal13g1712 13 16756881 16759423 LSH
Lal13g1712 13 16756881 16759423 Lal24g1297 24 14305593 14307841 LSH
Lal18g0569 18 4776567 4778373 Lal13g1712 13 16756881 16759423 PCT
Lal22g1323 22 16116390 16119086 Lal13g1712 13 16756881 16759423 PCT