Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1667 ATGGCTGGAAGCGCTATTAAGCAGCTATTGAGGAGGAATCTCCAATCTAATTCTACGAAATTTTTTTCATCCATCGTTACAAAGAAAGATAGTGCTAGCTCTACTGGCAGCAGCTCCTTACGAGCACTTGCCTTAATTGGAGCTGGTGTCTCAGGTTTTTTTGCTTTTGCAACAACAGCATCAGCTGATGAAGCTGAGCATGGCCTGGCATCTCCAAACTATCCATGGCCTCATGAGGGCATCCTCAGTTCCTACGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATACACAAGTATGTGCTTCCTGCCATTCCATGTCTTTGATATCATACCGTGATTTGGTCGGTGTTGCTTATACAGAAGATGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGACCTAATGACGAGGGTGAGATGTTTACACGCCCTGGTAAACTGAGTGATCGCTTTCCTCAGCCATACGCAAATGAAGCAGCTGCTAGGTTTGCCAATGGAGGAGCCTACCCTCCAGATCTAAGTCTTGTTACCAAAGCTCGTCACAATGGTCAGAACTACGTGTTTGCTCTTCTAACTGGTTATCGCGACCCTCCTGCTGGTGTTTCGATTAGAGAGGGACTGCACTATAATCCTTATTTTCCTGGTGGAGCCATTGCTATGCCTAAAATGCTTAATGATGGCGCTGTTGAATATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGGAAGGATGTTGTATCATTCTTAACTTGGGCCGCCGAACCTGAAATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTGCTATCATTGGCATTACTGCAAGCCGCCTATTACCGCCGCCTTAGGTGGTCTGTTCTAAAGTCTCGAAAGCTGGTTCTTGATGTTGTCAACTAG 918 0.4564 MAGSAIKQLLRRNLQSNSTKFFSSIVTKKDSASSTGSSSLRALALIGAGVSGFFAFATTASADEAEHGLASPNYPWPHEGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEDEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLVTKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1667 305 Gene3D - 261 304 - -
Lal13g1667 305 SUPERFAMILY Cytochrome c 69 259 IPR036909 GO:0009055|GO:0020037
Lal13g1667 305 Pfam Cytochrome C1 family 76 292 IPR002326 GO:0009055|GO:0020037
Lal13g1667 305 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 260 304 IPR021157 -
Lal13g1667 305 Gene3D - 65 260 IPR036909 GO:0009055|GO:0020037
Lal13g1667 305 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 10 305 - -
Lal13g1667 305 PRINTS Cytochrome C1 signature 74 93 IPR002326 GO:0009055|GO:0020037
Lal13g1667 305 PRINTS Cytochrome C1 signature 94 113 IPR002326 GO:0009055|GO:0020037
Lal13g1667 305 PRINTS Cytochrome C1 signature 139 159 IPR002326 GO:0009055|GO:0020037
Lal13g1667 305 PRINTS Cytochrome C1 signature 172 196 IPR002326 GO:0009055|GO:0020037
Lal13g1667 305 PRINTS Cytochrome C1 signature 210 221 IPR002326 GO:0009055|GO:0020037
Lal13g1667 305 PRINTS Cytochrome C1 signature 221 240 IPR002326 GO:0009055|GO:0020037
Lal13g1667 305 PRINTS Cytochrome C1 signature 241 260 IPR002326 GO:0009055|GO:0020037
Lal13g1667 305 PRINTS Cytochrome C1 signature 260 275 IPR002326 GO:0009055|GO:0020037
Lal13g1667 305 ProSiteProfiles Cytochrome c family profile. 88 195 IPR009056 GO:0009055|GO:0020037
Lal13g1667 305 PANTHER CYTOCHROME C1 10 305 IPR002326 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1667 Lal-Chr13 16425907 16432016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1667 1 305 Chloroplast and Mitochondria Gene Families AT3G27240 84.039 1.01e-179 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1667 K00413 - gmx:100803087 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1667 13 16425907 16432016 Lal13g1667 13 16425907 16432016 ECH
Lal12g1351 12 16626513 16632833 Lal13g1667 13 16425907 16432016 LSH
Lal13g1667 13 16425907 16432016 Lal24g1265 24 13982165 13989193 LSH