Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1642 ATGGTATCTCAAAATGGGGCAATACAAGAGCCAAAGTTTGCACCTTTGGCTAGGCAAGGGTCATTGAGTAATCTAACCCTTGATGAGGTACAGAACCAGCTTGGGAATTTGGGGAAACCACTCGGCAGCATGAATCTCGATGAGCTTCTTAAGAGTGTGTGGAGTGCTGAAGCTGGTAGTGATGTGGTCTCTGGATTGGACTTTAGTGGTGGTGGTGCTAATAACAAGCAGCTGCATGGTGAGCTTGTTTCGGGGTCGTCTTTGAACCGACAGGGTAGTTTAACATTGTCGGGCGATCTTTGCAAGAAAACCGTTGACGAGGTTTGGAAAGATATGCAGATGAAAAAAGACGGTGATAGGGATAGGAAAGCTGAAGAGAGACATCCTACATTGGGTGAGATGACCTTGGAGGACTTCTTAGTGAAGGCTGGAGTGGTTACTGATTCTTTTCCTACGAAAGATGTCGATGTCGGTAATGGTGCTATGCCACGGATTGATTCAAATGAGGCTTCACAGAAAAGTGCTTCACAACATGGTAATTGGTTGCAATACCAACATCAACATCAAAATCTGCAGGATAATATGATGGTTGGCTTTGCGGCTGGCAATGCCATTCAACAGCCTTTCCAGGTTGCAATGAATCCGATTTTGGACGCAGCATACTCTGAAACAATGGCAACAATGTCACCATCAGATACACAAACTCTAGGCCGGAAAAGGGTTGCCTCTGGCAATGTAGTAGTAGAGAAAACTGTGGAGCGGAAGCAGAAGAGGATGATTAAAAATAGGGAATCTGCAGCTCGGTCAAGGGCAAGAAAACAGGCTTACACCCAAGAACTGGAGATTAAAGTTTCGCGTTTAGAAGAGGAGAATGAAAAGCTTAGAAGACAGTGTGAAATAGAGAAGGTATTGCCATGCGCACCACCACCGGACCCTAAGCACCAGCTTCGCAGAACAGGTTCGGCGAACTTTTGA 975 0.4574 MVSQNGAIQEPKFAPLARQGSLSNLTLDEVQNQLGNLGKPLGSMNLDELLKSVWSAEAGSDVVSGLDFSGGGANNKQLHGELVSGSSLNRQGSLTLSGDLCKKTVDEVWKDMQMKKDGDRDRKAEERHPTLGEMTLEDFLVKAGVVTDSFPTKDVDVGNGAMPRIDSNEASQKSASQHGNWLQYQHQHQNLQDNMMVGFAAGNAIQQPFQVAMNPILDAAYSETMATMSPSDTQTLGRKRVASGNVVVEKTVERKQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENEKLRRQCEIEKVLPCAPPPDPKHQLRRTGSANF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1642 324 CDD bZIP_plant_BZIP46 254 308 - -
Lal13g1642 324 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 257 272 IPR004827 GO:0003700|GO:0006355
Lal13g1642 324 Gene3D - 252 304 - -
Lal13g1642 324 Coils Coil 270 304 - -
Lal13g1642 324 MobiDBLite consensus disorder prediction 305 324 - -
Lal13g1642 324 SUPERFAMILY Leucine zipper domain 254 300 IPR046347 GO:0003700|GO:0006355
Lal13g1642 324 Pfam bZIP transcription factor 254 298 IPR004827 GO:0003700|GO:0006355
Lal13g1642 324 PANTHER BZIP TRANSCRIPTION FACTOR 2 322 - -
Lal13g1642 324 SMART brlzneu 250 307 IPR004827 GO:0003700|GO:0006355
Lal13g1642 324 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 252 297 IPR004827 GO:0003700|GO:0006355
Lal13g1642 324 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 322 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1642 Lal-Chr13 16197544 16202489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1642 1 324 bZIP Transcription Factor Family AT3G56850 54.601 2.75e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lal13g1642 bZIP_1 1.2e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1642 K14432 - gmx:100170741 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1642 13 16197544 16202489 Lal24g1245 24 13751364 13754463 LSH