Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1641 ATGAACATGGATCATTACAAGGTTCTAGGTTTACACAGAACCGCATCCAAAGAAGAAATCAAAACAGCGTTCAAGAAATTAGCCTTTCAATTTCACCCAGACAAGCATTCTCAATCTTCCAAATCCATTAGAGACGCTGCTACTCTTCGATTCAAACAAGTTTCTGAGGCCTATGAGGTTCTCATGGACGATCGCAAACGCGCCGATTACAATTTCAGATTTCGCTCCGGCGCCGGCGCCACCGGTTACGGTGGTGCCGGCGGTGGTGGTTATTATAGTTCTTATGGATATGGTTATGGTAGGAGTGGGGGCGGTTATGAATCTTCTAGGTATAAGTCTTCTACTACGTCTGGGTTTAATGGTGGTGGTGGATTTGCGTCTAGGTTTGAGATTGCTATGAGGATTTTGACGGCGAGATCTTCTCTTCTCAGTCTTGGTTTTGCAGCGGCTATTTTAGGTTCAATAGTTGTCATCAATACAAGTGGAGAATCCTTGTGGAATATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAAGTCCATCGAGAAAGCGAAAGCATACAGAGAAGAAAACATGAAGGAACTTTACAATAATTAA 600 0.4283 MNMDHYKVLGLHRTASKEEIKTAFKKLAFQFHPDKHSQSSKSIRDAATLRFKQVSEAYEVLMDDRKRADYNFRFRSGAGATGYGGAGGGGYYSSYGYGYGRSGGGYESSRYKSSTTSGFNGGGGFASRFEIAMRILTARSSLLSLGFAAAILGSIVVINTSGESLWNMQNSGKSFEEAMKSIEKAKAYREENMKELYNN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1641 199 PANTHER CO-CHAPERONE PROTEIN DJLA 3 180 - -
Lal13g1641 199 PANTHER CHAPERONE PROTEIN DNAJ 72 3 180 - -
Lal13g1641 199 CDD DnaJ 4 63 IPR001623 -
Lal13g1641 199 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lal13g1641 199 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lal13g1641 199 PRINTS DnaJ domain signature 46 66 IPR001623 -
Lal13g1641 199 PRINTS DnaJ domain signature 66 85 IPR001623 -
Lal13g1641 199 SUPERFAMILY Chaperone J-domain 3 100 IPR036869 -
Lal13g1641 199 SMART dnaj_3 3 66 IPR001623 -
Lal13g1641 199 Pfam DnaJ domain 4 71 IPR001623 -
Lal13g1641 199 ProSiteProfiles dnaJ domain profile. 4 74 IPR001623 -
Lal13g1641 199 Gene3D DnaJ domain 2 131 IPR036869 -
Lal13g1641 199 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1641 Lal-Chr13 16189735 16195842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1641 5 71 C2H2 Transcription Factor Family AT1G74250 40.299 4.18e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1641 - - lang:109336420 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1641 13 16189735 16195842 Lal13g1641 13 16189735 16195842 ECH