Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1640 ATGGGAAGCAGAAAGGAAGAAGAGAAGAGAGAGAAAATTATCAGGGGTCTCATGAAGCTTCCACCCAATCGAAGATGTATAAACTGTAATAGTATGGGACCTCAGTATGTTTGTACAAGTTTCTGGACCTTTGTTTGTGTGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTTTCTATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGTGGTAACCAGCGTGCAAGGGAAACATATTTGAATAGTTGGGACTTCCAGAGGCAGCGGTTGCCAGATAACAGCAATGTTGATAAAATAAGGGAGTTCATAAGAAATAGCCCTAGAATCCAAGAAGACGACTTAAGACGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCGTATGATAATCAATATGAGGATCGGCGATATGGGAAACAAGCATCTTCTCTGACCAGGAAGCCAGGTTCTGATAAAGTTCGATATGAAGGGAAGATGTCTAATATTATCTATAGTCCTGGTCGATTTAGTGATCATGCATTTGACGATAGATTTGCAAACGAGGGATCTGGTCCGAGAATTTCTGACTTTTCTGTTTCTAGTGCTGGCGACCAATTCAAATCTGATGTCCAGTCTCCTACATTTCATAAGGATGTTGGGTTCAGCAGTCCATCTTATCAGGGTTCTGGATCCAACTCAATTGAAGATGTATGGTCTCAAGCAAGGAATACAGGCCTGGGAACTAATGCCAAGAGAGATGCAGGTGGAACTCATCTTCCACAGCCCAACAAATCAACCACCAAGGTCATAGATCTGCAATTTGTGGAGGTTGATGGAATTGAAGCTAGAACTACATCATTACAATCAGCAAACAGCAACTTTTCATCCTTAAGATCTTACAATTCTGGCAGTGTAGTTGATTTTTTCTCTGAAACTGTCCAAGCTTCAGGATCCCTTCATAATAAAGCTGCTGGTGCTCCTCATTCATCTGGTCCTACAAGATCTGTTAGCATGAATCTTTCCAAGTCACCACTGCCCTCTGAACAGTTTCCCTCATCAACTTCATCTGTTGATCTTTTTCAGTTACCTGCAGCACCACCTCAAGCTCCATTGGCGAATCTGTTTCAATCATCTGTTTTGTCTGCAGCTCCATCTTTCAATGAGAGTCAACCTACGCAAATACCCCAACCCTCATCTATTGACTTTTTTGCAGATTTTGGTCAGCAGCCATCTACTGAAACCTCATCAGCAACATCTCATCTTCCGTCGGTTGATCTCTTTCAATCCTCTGTTTTGTCTGCTGCTCCATCTTTCAACCAGGATCATCCTAGACAAATATTCCAACCCTCATCTATTGACTTCTTTGAAGATCATTCTCAGCAGCCATCAACTACAAACCCAACAGCTCCAAATGAAGCTCCACCATTGAATCTGTTTCAATCATCTGTTTTGTCTGCAGTTCCGTCTTTGACAGAGGATCAACCTATCCAAACATCCCAAACACCATCGGTTGACTTCTTTGCAGATTTTTATCTGAAGCCTTCTACAGCATCCTCTGATGAGCAGTCACTGGAGTTATCTGCCCCTAAAAATGAAGGGTGGGCAGTGTTTGATATGCCTCAGAGCACATCATCTACTGCACAAGTTGGGACTCCTGCTGCAGCACCTTCAAGTGAAGGATCTTTGCAGGAAAGATTTGACCCATTTTCAAACTTCAATGCAAACATGCAATTGCCATCTGTTGAGATTTCCAGTGTTAGTGCACCACCTTCTTCAGCTACATCTAACTTATGGCATGATGGTGTGTGGAATGTAGAAGAAAAGGCTCATGATATTGCAATAAACACTCAACCATGGAATGCATTTGAAAGTCCTGACAACCATCTTCCTGTGGATGCTGATAATCAATATTTGGGTTCAAGAACTTCTGAGTTTGGTGTATCCAATGAAGGTGGTATGCAAGGAATTGCCTCTTTTGTTGGATTTGATAATCTTGACATCCCACCACATGTCAGTGCTTCACTAAACCTTTCACCCACTCTTCCTCTAGTGGGAGATATGCAATCTAATGGAATCAGTTCTAAGTCAAAAAATCCATTTGATTATCCCTATGATTCTGATGTAGAACACAACAGTATGTTCCTTGATGTGAGCTCTTTGCAAGCTTCTCTGCCGGATGCCCTGTTGCCTGCCACCTTCGGTGGTGGTATAGCTGAACCATGGCACCCTCAAAACATGTCAACGTCATATATTTCCTCGACAGGACAACGTGGTTTGTCATTCATGTCTGCGCAACCACTAAGTTCTCAAATTCATATTAATTCCTTACTGATCCTGAAAGGAAAAGAAAGTTACCTGATTGGTGGAATGTCCAGACACCAGAACCAGTTGCTTCTTTTGGGGGAAATCCTTTTGCATAAAGATTATCCCGTACATTGTAGTGTCACTTTCACAGAGAAATTCATGTGCAGCCAGTCTTACTCATGGAAGAAGTTTCAATGCTTTTATCCATTGTTAGAACAAAATGAAGTTCATTACTTGTGCTTGAACCCGGTATCACCATTACAAATCGAAGAGGACCTGGTACCACCATTGCAGAAGGAAGGGCAGGGACAACTGATGACAATCTCTGAATCCATAAGTTTTGTTGATGTAGGGTGGTGGTGA 2676 0.4204 MGSRKEEEKREKIIRGLMKLPPNRRCINCNSMGPQYVCTSFWTFVCVTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRARETYLNSWDFQRQRLPDNSNVDKIREFIRNSPRIQEDDLRRASSYHSYSQSPPYDNQYEDRRYGKQASSLTRKPGSDKVRYEGKMSNIIYSPGRFSDHAFDDRFANEGSGPRISDFSVSSAGDQFKSDVQSPTFHKDVGFSSPSYQGSGSNSIEDVWSQARNTGLGTNAKRDAGGTHLPQPNKSTTKVIDLQFVEVDGIEARTTSLQSANSNFSSLRSYNSGSVVDFFSETVQASGSLHNKAAGAPHSSGPTRSVSMNLSKSPLPSEQFPSSTSSVDLFQLPAAPPQAPLANLFQSSVLSAAPSFNESQPTQIPQPSSIDFFADFGQQPSTETSSATSHLPSVDLFQSSVLSAAPSFNQDHPRQIFQPSSIDFFEDHSQQPSTTNPTAPNEAPPLNLFQSSVLSAVPSLTEDQPIQTSQTPSVDFFADFYLKPSTASSDEQSLELSAPKNEGWAVFDMPQSTSSTAQVGTPAAAPSSEGSLQERFDPFSNFNANMQLPSVEISSVSAPPSSATSNLWHDGVWNVEEKAHDIAINTQPWNAFESPDNHLPVDADNQYLGSRTSEFGVSNEGGMQGIASFVGFDNLDIPPHVSASLNLSPTLPLVGDMQSNGISSKSKNPFDYPYDSDVEHNSMFLDVSSLQASLPDALLPATFGGGIAEPWHPQNMSTSYISSTGQRGLSFMSAQPLSSQIHINSLLILKGKESYLIGGMSRHQNQLLLLGEILLHKDYPVHCSVTFTEKFMCSQSYSWKKFQCFYPLLEQNEVHYLCLNPVSPLQIEEDLVPPLQKEGQGQLMTISESISFVDVGWW 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1640 891 MobiDBLite consensus disorder prediction 545 565 - -
Lal13g1640 891 Gene3D Arf GTPase activating protein 2 120 IPR038508 -
Lal13g1640 891 CDD ArfGap_AGFG 11 113 - -
Lal13g1640 891 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 88 IPR001164 GO:0005096
Lal13g1640 891 SMART arf_gap_3 8 129 IPR001164 GO:0005096
Lal13g1640 891 PANTHER ARFGAP/RECO-RELATED 1 419 IPR044820 GO:0005096
Lal13g1640 891 PANTHER ARFGAP/RECO-RELATED 444 775 IPR044820 GO:0005096
Lal13g1640 891 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 419 - -
Lal13g1640 891 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 444 775 - -
Lal13g1640 891 SUPERFAMILY ArfGap/RecO-like zinc finger 11 114 IPR037278 -
Lal13g1640 891 MobiDBLite consensus disorder prediction 389 423 - -
Lal13g1640 891 MobiDBLite consensus disorder prediction 323 356 - -
Lal13g1640 891 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lal13g1640 891 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lal13g1640 891 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Lal13g1640 891 MobiDBLite consensus disorder prediction 459 479 - -
Lal13g1640 891 MobiDBLite consensus disorder prediction 248 267 - -
Lal13g1640 891 MobiDBLite consensus disorder prediction 331 356 - -
Lal13g1640 891 Pfam Putative GTPase activating protein for Arf 12 114 IPR001164 GO:0005096
Lal13g1640 891 MobiDBLite consensus disorder prediction 122 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1640 Lal-Chr13 16178704 16187077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1640 14 120 C2H2 Transcription Factor Family AT4G05330 32.203 3.11e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1640 K15044 - gmx:100788316 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1640 13 16178704 16187077 Lal13g1640 13 16178704 16187077 ECH
Lal12g1332 12 16356966 16366709 Lal13g1640 13 16178704 16187077 LSH