Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1630 ATGAGTTCATATACCTTCAACAGTGGTGGTTATGATTCCTATGGATACCTATCCAGAGCCCCTATTGGTTCTTCAGTTGTTCTTGTTCCCCAACAACCTCTTTTGACTAACCCTTTTGGTGTGATGGGTCCACCAGAAGAGGTTGAAGTTGAAGCTAGGGGTTCTTCTGTGGCTGCTGGGAAAAATAAACTTTGTGCTAGAGGTCACTGGAGACCCATTGAAGATGCTAAACTCAAAGAGCTTGTTGCTCAATATGGTGCTCAAAACTGGAATTCCATTGCTGATCATTTTGATGGAAGATCAGGAAAAAGCTGCAGATTGAGGTGGTTTAATCAACTTGACCCTAGAATCAAAAGAGGTGCTTTCACTGAAGATGAGGAAACAAGGCTAATATATGCTCATAGTTTATATGGTAACAAATGGGCTTTGATTTCTAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAACCATTGGCATGTGATGAATGCAAGGTGGCAGAGGGAAGAATCAAATTACTATAGGAGAAACAATCCCTACCTTCTAAGGGATTTGAGTCTTAGAAACAATATTGCAGTTAGTGGATTATCAACCACAAGTACCATCACTGAAGCTGCATCAACCTGCACTAACATCACTCTCAACCCCTCTTTAGGGATACCAAATTTCAGCCCCTTTTATAATTATAATGATAATTATAATTATAGTTATAATTATAATTATAATTATAACAACATGGGTCAAGCTCAGAATCATGCTAATGGGTCTCAAATGGGTTTACTTGGAGAAAGGATGGTACAAACTGAGCATGTTGATTTTGGCAAGGTTTTTGGTGCTTGGAATGGTTCATGTCAGATTGGACCCAATTATTCAGATACAAACTCAGAAGTTTCAGCATCTGAGTCAGTTGGCACCAACACCAATCTCTCATATTTTGCTGAAAATGAAAACATGGATAATAATAAGATTCAAATGCAATTCATTGACTTTCTTGGAGTAGGAGATGCATAG 1014 0.3876 MSSYTFNSGGYDSYGYLSRAPIGSSVVLVPQQPLLTNPFGVMGPPEEVEVEARGSSVAAGKNKLCARGHWRPIEDAKLKELVAQYGAQNWNSIADHFDGRSGKSCRLRWFNQLDPRIKRGAFTEDEETRLIYAHSLYGNKWALISRLFPGRTDNAVKNHWHVMNARWQREESNYYRRNNPYLLRDLSLRNNIAVSGLSTTSTITEAASTCTNITLNPSLGIPNFSPFYNYNDNYNYSYNYNYNYNNMGQAQNHANGSQMGLLGERMVQTEHVDFGKVFGAWNGSCQIGPNYSDTNSEVSASESVGTNTNLSYFAENENMDNNKIQMQFIDFLGVGDA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1630 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 113 IPR017930 -
Lal13g1630 337 SMART sant 66 115 IPR001005 -
Lal13g1630 337 SMART sant 118 166 IPR001005 -
Lal13g1630 337 Gene3D - 121 163 - -
Lal13g1630 337 PANTHER OS08G0435700 PROTEIN 55 336 - -
Lal13g1630 337 CDD SANT 121 163 IPR001005 -
Lal13g1630 337 Gene3D - 67 118 - -
Lal13g1630 337 ProSiteProfiles Myb-like domain profile. 67 113 IPR001005 -
Lal13g1630 337 PANTHER MYB PROTEIN-RELATED 55 336 - -
Lal13g1630 337 Pfam Myb-like DNA-binding domain 67 113 IPR001005 -
Lal13g1630 337 Pfam Myb-like DNA-binding domain 119 161 IPR001005 -
Lal13g1630 337 SUPERFAMILY Homeodomain-like 67 160 IPR009057 -
Lal13g1630 337 CDD SANT 70 111 IPR001005 -
Lal13g1630 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 168 IPR017930 -
Lal13g1630 337 ProSiteProfiles Myb-like domain profile. 114 164 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1630 Lal-Chr13 16087293 16088765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1630 63 231 MYB Transcription Factor Family AT5G17800 56.742 3.69e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g1630 Myb_DNA-binding 4.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1630 K09422 - qsu:111993092 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1630 13 16087293 16088765 Lal13g1630 13 16087293 16088765 ECH