Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1619 ATGGTGTACTGCGATCATTGTTTGAGAAATGTTACGGGGGAAAGAGAATTCGACGGTTCCTTATCTTGTGATATATGTGGGAAGTTACTTGAAGATTTTATTTTTTCTCAGGAACCTACTTTTACAAAAAATGCGTCCGGGCAGGGTGAGCTTGACACAATGTTTAGGTGGTTGCTTAGTGACCTTGAGGTCACAGGTTCAAATCCTGGGAACAGCCTCACCGCTGCTTGTGGGATGTTTCCCCGAAGTGCCAAACGAAAAGGGAGCCAACTATCAGGCCATTATGTAAGAACAATTCAAAGCGAGTTCTCTGCTTCACGCCAAAGGACTTTAGATAGAGCTTTAGATGAAATCATATATTTAAGTAGCAGCCTTGGAGTGGATGATGTTAATGTCCCCCACCAAGCTTTGGCATTTTATAAAGTATTGAAGATAGCACTTGAAAGAAATTTTACAAGGGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTTTATATTGCATTCCGGGAAAATAATAAGCCGTACCTTCTTATTGACTTTTCAAATCATTTAAGGACAAATGTCTATGTGCTAGGTGCAGTTTTTTTGCAGCTTTGTAAAGTATTAAGGCTCGAAGAGCACCCAATTGTTCAAAAACCTGTTGATCCCAGTCTTTTTATTTATAAATATACGAATAATTTGTTAAAGCAAAGAAACCTGGCTGTCTCTGAAACTGCACTGAGTATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGTAGGAAGCCAAGCGGATTATGTGGTGCAGCATTATACATGTCTGCGCTTGCACATGGTTTTAAGTGCTCTAAGCCAGATATTTTAAGAATCGTCCATGTATGTGAAGCAACATTGACTAAGCGGTTGGTAGAGTTTGAGAATACAGAGTCTGCTAGCTTGACAATTGAGGAGTTGAATGCGATGGCAAAAGAACATGAAAAGATCCCTATTATGATACCAAATGGTGAACTGAGCAAAGGTACTTCAAAATATCTACTATGCGAACACAAGGATAGTGCTGAGCCCTACTTTGCACTTGGATTATGTGAAACATGTTATAAGGATTTTGATAAACTCTCTGGCGGACTTAGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAGAGAGCCACAAACTCACTTGCTGAGCAAGGTGCCAATAAATCAGATAATTTGGTGAAAGCATCAAATGATGCATGCAGGAACAAAAAGGAAGACTTCCATGCCTCGGAGCCAGAAAGTATCGGGGCGGATGATGAACATGTGGCCGTTAAAGATGACAAACATATGGAAGATGATATGAACGAAAAATCTTGTAATGAATCAGAGACTCTCTCCGACATTGATGACCAGGAGGTTGATGGTTACATTCACAATGAGGAGGAAAAGTATTACAAGAAGATTATATGGGAAAAAATGAACAGAGAGTATCTTGAGGAACAAGCAGCCAAGCAGGCAGTTGAAGAAGCTGCTAGGAAAGCTTTTGAGGCGAGTTTTGAAGGTTCTGATGATTTGCTGGCAGAGAGAGCATCTGTTGCTGCAGCTGTGGCAAATTTGAGAAAGGAAACAAGACAGAAACGAGCTCAAGAATTGAAAAATTTAGGTCCTGCTCAATCTGCTGTTGAGGCCACTCGCCAAATGTTGAGAACAAAGAGGCTCAGCTCCAAAGTCAATTATGATCGCTTGCAAAACTTATTTGACGAACGTGAGGCTCCAGAGAATCCCAAGAAAGTACGATTTGATCTACCCTCTGATAATCCTGACAAATTGGAGTCTAAGATAGAGGAGAAACTGAAGGATGATGAACCGGGATTACCAGATGAAACCGATGATGGTGATATTGACGGAGATTATGAAAATGTCGATGAGACATATAGCTATGCGGATGATGGTTATAATTATGAGGGTGGTGGTTATAATAACTATGATGATGATTACTGA 1974 0.4103 MVYCDHCLRNVTGEREFDGSLSCDICGKLLEDFIFSQEPTFTKNASGQGELDTMFRWLLSDLEVTGSNPGNSLTAACGMFPRSAKRKGSQLSGHYVRTIQSEFSASRQRTLDRALDEIIYLSSSLGVDDVNVPHQALAFYKVLKIALERNFTRGRKSEQVQAACLYIAFRENNKPYLLIDFSNHLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKYTNNLLKQRNLAVSETALSIIASMKRDWMQTGRKPSGLCGAALYMSALAHGFKCSKPDILRIVHVCEATLTKRLVEFENTESASLTIEELNAMAKEHEKIPIMIPNGELSKGTSKYLLCEHKDSAEPYFALGLCETCYKDFDKLSGGLSGGLDPPAFQRAERERATNSLAEQGANKSDNLVKASNDACRNKKEDFHASEPESIGADDEHVAVKDDKHMEDDMNEKSCNESETLSDIDDQEVDGYIHNEEEKYYKKIIWEKMNREYLEEQAAKQAVEEAARKAFEASFEGSDDLLAERASVAAAVANLRKETRQKRAQELKNLGPAQSAVEATRQMLRTKRLSSKVNYDRLQNLFDEREAPENPKKVRFDLPSDNPDKLESKIEEKLKDDEPGLPDETDDGDIDGDYENVDETYSYADDGYNYEGGGYNNYDDDY 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1619 657 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Lal13g1619 657 PRINTS Transcription initiation factor IIB signature 162 181 IPR000812 GO:0006352|GO:0070897
Lal13g1619 657 PRINTS Transcription initiation factor IIB signature 256 272 IPR000812 GO:0006352|GO:0070897
Lal13g1619 657 CDD CYCLIN 236 291 IPR013763 -
Lal13g1619 657 Gene3D - 104 208 - -
Lal13g1619 657 MobiDBLite consensus disorder prediction 616 635 - -
Lal13g1619 657 Pfam Brf1-like TBP-binding domain 457 578 IPR011665 -
Lal13g1619 657 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 581 IPR029529 GO:0000126|GO:0000995|GO:0006383
Lal13g1619 657 SMART cyclin_7 219 302 IPR013763 -
Lal13g1619 657 SMART cyclin_7 116 201 IPR013763 -
Lal13g1619 657 MobiDBLite consensus disorder prediction 575 657 - -
Lal13g1619 657 MobiDBLite consensus disorder prediction 575 615 - -
Lal13g1619 657 MobiDBLite consensus disorder prediction 384 404 - -
Lal13g1619 657 SUPERFAMILY Cyclin-like 122 206 IPR036915 -
Lal13g1619 657 Gene3D - 216 308 - -
Lal13g1619 657 SUPERFAMILY Cyclin-like 215 311 IPR036915 -
Lal13g1619 657 CDD CYCLIN 114 186 IPR013763 -
Lal13g1619 657 Pfam Transcription factor TFIIB repeat 213 302 IPR013150 GO:0017025
Lal13g1619 657 Pfam Transcription factor TFIIB repeat 109 200 IPR013150 GO:0017025
Lal13g1619 657 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 581 IPR000812 GO:0006352|GO:0070897
Lal13g1619 657 Gene3D Single helix bin 450 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1619 Lal-Chr13 15973123 15992289 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1619 1 562 Inorganic Solute Cotransporters AT2G01280 38.328 1.68e-99 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1619 K15196 - gmx:100789154 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1619 13 15973123 15992289 Lal13g1619 13 15973123 15992289 ECH