Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1599 ATGGAAATTCAATTCCAACAACAAAAGCAGCATTTGGGGCAGAGCATGGGAATCAAAAAAGGAGGAAAATACAAAGGAAAAAATAACAGAAACAAGTTAATTGGTGTGAGACAAAGGCCTTCAGGGAAATGGGTAGCAGAGATTAAAGATACAATTCAGAACATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAGGAAGCAGCCAGAGCTTACGACGAGGCCGCGTGTCTTCTTCGTGGATCGAATGCTCGCACCAACTTCATCACTCATGTCTCATCAGACTCTCCCCTCGCTTTTCGGATTCGAAATCTCCTTAACAACAGAAAATGTAACAAAGAACATGAAAATGTGGATGCAACTCTTACTAGTAATAGCACTAGTACTAGTACTAGTAATAGCACTAGTACTAGTAGTACTAGTAATAGTACTAGTACTAGGAGTACAACAAATAATGATAAGAGTAACAATAACTCAATTTCTAATGTGACAACAACCCAAAATACACAACTATATGATGATGCGTATAGACCAGATTTGAGTAACTTCAAGGAGGAGTTTGAGTCATGTTTTCAGCACAATCATTCAGAGAATTTTGGATATGTTTTTGAGGGTTTTCCTTTTGCTCAAGTATTGGATATACCAAAGATTGATGGCATGCAAGATACAAATAATATAAGCTTGGAGATTTCAGAATTTGAAAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTTTATGCAATTAATGGTGTAAAAGAGTACATGCAAACTGTTCAGGATTCTAATGAAGCTCTATGGGATCTTCCACCTTTGTGCTCCTTTTTATCTGAACTTTAA 840 0.3702 MEIQFQQQKQHLGQSMGIKKGGKYKGKNNRNKLIGVRQRPSGKWVAEIKDTIQNIRMWLGTFETAEEAARAYDEAACLLRGSNARTNFITHVSSDSPLAFRIRNLLNNRKCNKEHENVDATLTSNSTSTSTSNSTSTSSTSNSTSTRSTTNNDKSNNNSISNVTTTQNTQLYDDAYRPDLSNFKEEFESCFQHNHSENFGYVFEGFPFAQVLDIPKIDGMQDTNNISLEISEFERMKVERQISASLYAINGVKEYMQTVQDSNEALWDLPPLCSFLSEL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1599 279 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Lal13g1599 279 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Lal13g1599 279 MobiDBLite consensus disorder prediction 118 166 - -
Lal13g1599 279 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Lal13g1599 279 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Lal13g1599 279 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Lal13g1599 279 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Lal13g1599 279 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 264 - -
Lal13g1599 279 MobiDBLite consensus disorder prediction 1 28 - -
Lal13g1599 279 MobiDBLite consensus disorder prediction 116 166 - -
Lal13g1599 279 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Lal13g1599 279 CDD AP2 35 88 IPR001471 GO:0003700|GO:0006355
Lal13g1599 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 8 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1599 Lal-Chr13 15818365 15819705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1599 19 276 AP2-EREBP Transcription Factor Family AT5G19790 40.672 2.91e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal13g1599 AP2 5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1599 K09286 - gmx:100796898 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1599 13 15818365 15819705 Lal13g1599 13 15818365 15819705 ECH
Lal8g1024 8 8061889 8062701 Lal13g1599 13 15818365 15819705 PCT
Lal10g0453 10 10734434 10735249 Lal13g1599 13 15818365 15819705 PCT
Lal13g1599 13 15818365 15819705 Lal8g1024 8 8061889 8062701 PCT
Lal13g1599 13 15818365 15819705 Lal10g0453 10 10734434 10735249 PCT