Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1582 ATGGAAGAGCCTATTGTGGTGAACAAAGCAGAAGAACCACTAGATTTGCCTCCAGGTTTCAGGTTCCACCCAACAGATGAAGAAATCATCACTTACTATCTCACACAGAAGGTGTTAAATAACAATTTTAGTGCAATTTCTATGGGTGAAGCTGATTTCAACAAGTGTGAGCCTTGGGATTTGCCTAAGACTTCTAAAACTATAATGTTTCAGATTTTAACCATGTCATATGACTATAATTGTGTAGAGAAAGCAAAGATGGGAGAGAAAGATAATTGGTTTTTCTTTTGCCAAAGAGATAGGAAGTATCCAACAGGAATGAGAACAAATCGTGCTACACAATCAGGGTATTGGAAAGCCACTGGAAAAGATAAAGAGATATACAAAGGGAAAGGTAACTTGGTTGGGATGAAAAAGACCCTTGTTTTCTATAGAGGAAGAGCTCCAAAGGGAGAGAAAACCAATTGGGTTATTCATGAATTCAGATTAGAAGGCAAATATGCAAATTATAACCTCCCTAAAGTTGCAAAGGATGAATGGGTTGTCTCAAGGGTTTTTCATAAGAACACAGATGTTAGAAAAATCCCTCCTTTTAGGATGAACTCAATTGGAGAAGATCTTCTTGATTTTTCTTCACCGTCACCTCTCATGGATCCTTCTTATGGCACTAACCAACCATCTTCATCATCAACTAAACCATCATCAAATAATCACTATCTTTCAAACTTCTTCATCAATAACAACAATCAAAACCAGAACATGCTGATGAAGCTAGAAGAGGATAGAACCTATGAGATTCCTAATAATCTTACCAATAACTATACAATCAATAATATTCAATGGAATTATTGCACTAATGGTAGTCCAATAATGTTGAACACAGTTTCTCAGTCTCAACAGAACATGATCTCAGATTATTATGTACACCAAGGGAATAATAATAAAGAAAATATGTGTGTATTATTGAACAACATGCAGTGCAAGATGGAGCAATTCACTTCTAATAACCAATCTATGGTAAGTGTCTCTCAAGAAACGTGTCTCAGCAATGACAGAAACACTGACACAACATCTTCAGTGGTTTCTAAGCATGACAACATAGGAAGGAACAATAATGGAGTATTGTATGATGATCTTGAAGTTCCATCATCAGTTGCTACCCTCTCAGATATGGAATGCATGTGGGATAATACTGACTACAGATTATGA 1209 0.3615 MEEPIVVNKAEEPLDLPPGFRFHPTDEEIITYYLTQKVLNNNFSAISMGEADFNKCEPWDLPKTSKTIMFQILTMSYDYNCVEKAKMGEKDNWFFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVIHEFRLEGKYANYNLPKVAKDEWVVSRVFHKNTDVRKIPPFRMNSIGEDLLDFSSPSPLMDPSYGTNQPSSSSTKPSSNNHYLSNFFINNNNQNQNMLMKLEEDRTYEIPNNLTNNYTINNIQWNYCTNGSPIMLNTVSQSQQNMISDYYVHQGNNNKENMCVLLNNMQCKMEQFTSNNQSMVSVSQETCLSNDRNTDTTSSVVSKHDNIGRNNNGVLYDDLEVPSSVATLSDMECMWDNTDYRL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1582 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 66 - -
Lal13g1582 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 83 369 - -
Lal13g1582 402 MobiDBLite consensus disorder prediction 216 235 - -
Lal13g1582 402 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100-LIKE 3 66 - -
Lal13g1582 402 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100-LIKE 83 369 - -
Lal13g1582 402 MobiDBLite consensus disorder prediction 214 235 - -
Lal13g1582 402 ProSiteProfiles NAC domain profile. 16 188 IPR003441 GO:0003677|GO:0006355
Lal13g1582 402 Gene3D NAC domain 25 193 IPR036093 GO:0003677|GO:0006355
Lal13g1582 402 Pfam No apical meristem (NAM) protein 17 163 IPR003441 GO:0003677|GO:0006355
Lal13g1582 402 SUPERFAMILY NAC domain 12 189 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1582 Lal-Chr13 15667009 15669995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1582 1 379 NAC Transcription Factor Family AT5G18270 48.030 2.44e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal13g1582 NAM 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1582 - - gmx:100784372 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1582 13 15667009 15669995 Lal13g1582 13 15667009 15669995 ECH