Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1581 ATGAATGATCTTATGACAAAATCTTTCACCAGCTACATTGATCTAAAGAAAGCAGCACTGAAAGATGAAGTGGATTTGGAAGCTGGTAATCCTCACAACAATGTAGAACTAACCTCTTCTTCCACCGAAAAACTCGATACCGATATGGGTCTTTTCCTTGAAGAAGCAGAGAAGGTGAAAGAAGAAATGAACACCCTTCGTGACATACTAGAAAAGCTTAAACTTGCAAATGAAGAAAGCAAATCACTTCACAAGCCAGAAGCATTGAAATCCTTAAGGAACATCATCAATGCTGATATAATCACAGTGTTGAAAAAAGCAAGACTTATTAAGACCCAATTGGAAGAAATGGACAAAGCCAACGCCGCGAATCGAAGACTCTCAGGGCTTAAAGATGGGTCCCCTGCGATTTACAGAACAAGAATCGCGGTAACGAGCGGGTTAAGGAAGAAATTGAAAGAGGTAATGATGGAATTTCAAGGACTTAGGCAAAAAATTATGACTGAGTATAAGGACACAGTAGGTAGAAGGTACTATAATGTGATTGGTGAGTACCCAAATGAGGAAGTGATTGAGAAGATTATATCGAATGGCGAAGACGAGTTTTTAGGGAAAGCTATTGAGGAACATGGAAGAGGGAAGGTTATGGAAACTGTGATAGAAATTCAGGATAGGTATGATGCTGCTAAGGAAATTGAGAAGAGTTTGTTGGAGCTGCATCAAGTTTTTTTGGATATGGCTGTTATGGTTGAGGCTCAAGGTGAGAAAATGGATGATATTGAACATCATGTTATTCATTCTTCTCATTATGTAAAGGATGGGACTAAGAATCTTGAGAGTGCTAAGAAGTTGCAGAGGGGTAGCAGGAAGTGGATGTGTATTGGGATTATACTTTTGCTCATTCTCATTCTTGTCATTGTTATTCCGATTTTCACGAGTTTCGGCAGTTCTTGA 954 0.391 MNDLMTKSFTSYIDLKKAALKDEVDLEAGNPHNNVELTSSSTEKLDTDMGLFLEEAEKVKEEMNTLRDILEKLKLANEESKSLHKPEALKSLRNIINADIITVLKKARLIKTQLEEMDKANAANRRLSGLKDGSPAIYRTRIAVTSGLRKKLKEVMMEFQGLRQKIMTEYKDTVGRRYYNVIGEYPNEEVIEKIISNGEDEFLGKAIEEHGRGKVMETVIEIQDRYDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVIHSSHYVKDGTKNLESAKKLQRGSRKWMCIGIILLLILILVIVIPIFTSFGSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1581 317 ProSitePatterns Syntaxin / epimorphin family signature. 225 265 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lal13g1581 317 Pfam SNARE domain 256 307 IPR000727 -
Lal13g1581 317 Gene3D - 214 315 - -
Lal13g1581 317 CDD SNARE_syntaxin1-like 221 279 - -
Lal13g1581 317 SUPERFAMILY t-snare proteins 47 274 IPR010989 GO:0016020|GO:0016192
Lal13g1581 317 SMART tSNARE_6 214 281 IPR000727 -
Lal13g1581 317 CDD SynN 49 206 IPR006011 GO:0016020
Lal13g1581 317 PANTHER SYNTAXIN 5 310 IPR045242 -
Lal13g1581 317 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 310 - -
Lal13g1581 317 SMART SynN_4 44 171 IPR006011 GO:0016020
Lal13g1581 317 Coils Coil 53 79 - -
Lal13g1581 317 Pfam Syntaxin 52 254 IPR006011 GO:0016020
Lal13g1581 317 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 219 281 IPR000727 -
Lal13g1581 317 Gene3D - 49 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1581 Lal-Chr13 15651833 15652786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1581 1 317 SNARE and Associated Proteins AT1G08560 64.263 3.35e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1581 K08486 - gmx:100816016 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1581 13 15651833 15652786 Lal13g1008 13 7393013 7398250 PCT
Lal13g1581 13 15651833 15652786 Lal24g0773 24 6002288 6007244 PCT