Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1570 ATGATGAAATCATTCACATCCTCATCATCTTCCTCTAAGGCCACTAAGAAGAAACAAACAACCACAACAAGAAGTGCAACAACTTCCTCATCAACAACACAAGAGAAACCACTTCCACAACAACAACAACAACAACAACAACATGAGACTGCATGGGGAGGGAGGTACCTTGGTGTGAGGAGAAGGCCATGGGGACGATACGCCGCAGAAATTCGAGACCCTTCTACCAAAGAAAGGCATTGGTTAGGCACGTTTGACACGGCAGAAGAAGCTGCCCTAGCTTATGATAGGGCAGCTCGCTCCATGCGTGGATCACGTGCCAGAACCAATTTCGTCTACCCAGATACCCCGCCTGGTTCCTCGGTCACTTCCATTCTCTCTCCAGATGAACAAACTCAAAACTATCACAATCAAACCCAAGAATTTTCTCCACTCTTTGACCCACCAACCCATATTACCCAACAACCCGACCCTAATACCCATTTCTCTCTTTCGGGGTTTCCGGGTATGACGGATACTACCATGTTGTATGGTTATGATGATCAGAATCTGGGATCCACCACAGTTGACAGCTCAAATTTTCAGCAACTTTTTCATGATGATGAAACCCAGCTTCCACCATTGCCACCAGATATTACAAGCTCAGCGGGCTATGATATGGGCCATGGGTTTTACAATGGTGAGGCTGGGTTTTCTGACCCGGGCTTGAGTGCTTGTGTAGGTGGGTCAGGTTACCCATATTTGGGCTTTGATTCTGGTGAATATGTGCATAGCCCACTTTTCAGTTCAATGCCACCAGTGAGAGACCCAGAAGGTTTTGATTTTGGAAGCTCTTCTTATTTCTTCTAA 849 0.4629 MMKSFTSSSSSSKATKKKQTTTTRSATTSSSTTQEKPLPQQQQQQQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGSSVTSILSPDEQTQNYHNQTQEFSPLFDPPTHITQQPDPNTHFSLSGFPGMTDTTMLYGYDDQNLGSTTVDSSNFQQLFHDDETQLPPLPPDITSSAGYDMGHGFYNGEAGFSDPGLSACVGGSGYPYLGFDSGEYVHSPLFSSMPPVRDPEGFDFGSSSYFF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1570 282 MobiDBLite consensus disorder prediction 1 51 - -
Lal13g1570 282 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 282 - -
Lal13g1570 282 Pfam AP2 domain 56 104 IPR001471 GO:0003700|GO:0006355
Lal13g1570 282 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Lal13g1570 282 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Lal13g1570 282 CDD AP2 55 111 IPR001471 GO:0003700|GO:0006355
Lal13g1570 282 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Lal13g1570 282 MobiDBLite consensus disorder prediction 1 54 - -
Lal13g1570 282 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Lal13g1570 282 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Lal13g1570 282 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Lal13g1570 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 11 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1570 Lal-Chr13 15526832 15527680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1570 43 277 AP2-EREBP Transcription Factor Family AT5G13910 46.025 1.82e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal13g1570 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1570 K09286 - gmx:100815668 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1570 13 15526832 15527680 Lal13g1570 13 15526832 15527680 ECH