Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1554 ATGACATTCATAGAAATGGGGAGGCTTCAAAACTTTGATACACTAAAGTTACCTGTTGGGTACAGATTTTGTCCCACTGATGAAGAACTTGTCACTCATTACCTCAAGAGGAAAGTCTTTTCTGAACCATTACCTGTTTCTGTCATTTCTCACTTTGATGTGTTTCACACTTTGCCTTGGGAACTTCCAGGTGATTCCAAAGAAAAGATGTATTTTTTTAGCAATAGAAAGGGCCATGTCAGTGGAAACAGTACCAAGATTTTTGTTGGTTCTGGATACTGGAAATCTATAGGCAAAGACAAAGCAATTGTTGCATCTAATAGCAGACAAGTAATTGGGATGAGGAAAACACTAATTTATAGCAAAGGGAAACTTTCCAATGAGACAAGAACTCAATGGGTCATGCATGAATTGTGCCTTGTTGGTTCAGGAGCAACTTCCTACCCATTTCAGATGCCAGTGGCAAATTTTGCTGTGTATAGAATTTTTCAGAAGAAGAAGCTCATAAAGACAAAAGGGTATAATGGGAAAATCAGTATCAGTAGGAAAGTTGAGAATGTTAAACCAAATTTCATAGATTTCACAGTGGAATATGGTGATGATACAGGTCCTCCTCCACCTTGTTCCCCATTTCTCAGTGAAGACAGTGAAATATCATCTAATTTCAAGTTAGTTTAG 678 0.3761 MTFIEMGRLQNFDTLKLPVGYRFCPTDEELVTHYLKRKVFSEPLPVSVISHFDVFHTLPWELPGDSKEKMYFFSNRKGHVSGNSTKIFVGSGYWKSIGKDKAIVASNSRQVIGMRKTLIYSKGKLSNETRTQWVMHELCLVGSGATSYPFQMPVANFAVYRIFQKKKLIKTKGYNGKISISRKVENVKPNFIDFTVEYGDDTGPPPPCSPFLSEDSEISSNFKLV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1554 225 Gene3D NAC domain 26 170 IPR036093 GO:0003677|GO:0006355
Lal13g1554 225 ProSiteProfiles NAC domain profile. 17 165 IPR003441 GO:0003677|GO:0006355
Lal13g1554 225 SUPERFAMILY NAC domain 12 165 IPR036093 GO:0003677|GO:0006355
Lal13g1554 225 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 171 - -
Lal13g1554 225 Pfam No apical meristem (NAM) protein 18 138 IPR003441 GO:0003677|GO:0006355
Lal13g1554 225 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 17 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1554 Lal-Chr13 15330897 15333476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1554 15 167 NAC Transcription Factor Family AT5G13180 48.701 1.20e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal13g1554 NAM 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1554 - - lang:109340127 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1554 13 15330897 15333476 Lal19g1011 19 13974574 13976692 ECH
Lal13g1554 13 15330897 15333476 Lal7g0864 7 15201668 15203828 ECH
Lal13g1554 13 15330897 15333476 Lal14g1434 14 15554391 15556209 ECH
Lal13g1554 13 15330897 15333476 Lal13g1554 13 15330897 15333476 ECH
Lal13g1554 13 15330897 15333476 Lal24g1195 24 13193140 13195380 LSH