Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1551 ATGTCAAGTAGCAGGAACACTCATTGGTGTTACAGTTGCAGGAGACCAGTTCGATTGGGACGACAAGAAATGGTTTGTCATAGCTGTGGTGAGGGATTTGTTCAGGAGCTTAATGATATGGTGCCTGTAAACTCTCTAGACTTATTTGGTCTGGACAACAATGAAGGACGTGACCAAAGGTTTGGACTTATGGAAACTTTCTCAGCATTTATGAGGCAACGAATGGCAGATAGAAGCCATAGCCATGATATCAGGGCTCGATCAGATTTAATTCCTGAACATAGGCCTGGGTTCGCTCCTTTGTTGATCTTTGGCGGACAAATTCCTTTCGGGTTGTCTGGACATGGTGGCATTGAAGCTCTTTTTAATGGGACTCCAGGAATCGGTGTCACACGAGGTAACACGGGTGATTTGTTTATTGGTCCTGGACTGGAAGAACTGTTTGAACAGATTTCAGCTAATAGCCAGCAAGGTCCCCCACCGGCAACAAGGTCTTCTATAGACTCAATGCCTACTATCAAGATCACGCAGAGGCATCTTCGCTCAGATTCACATTGTCCAGTATGCAAAGATAAATTTGAGCTGGGATCTGAAGCTAGACAAATGCCATGCAACCATGTGTATCATTCTGATTGTATTGTTCCATGGCTAATCCAGCATAACACCTGCCCTGTTTGCCGCCAAGAATTGCCACCACAAGGATTGAGTAGTAATCGTACCTCAAATGGTCGAAGCAGAAGCAGTATTAGTAGCAGCGCCAACGGAAGGGTAAGTAGCAGCCGGGAGAACCGGGGAAGGCGAAATCCGTTATCTTTTTTGTGGCCATTCCGCTCTTCTAGTTCTAGCAGTAATGGAGCCACTGGAAGCAGCTCACCAGCATCAACTATCCCTGAGAATAGCCATCACTCAGGGTATTCTGGATGGCCATTTGAATGA 936 0.4605 MSSSRNTHWCYSCRRPVRLGRQEMVCHSCGEGFVQELNDMVPVNSLDLFGLDNNEGRDQRFGLMETFSAFMRQRMADRSHSHDIRARSDLIPEHRPGFAPLLIFGGQIPFGLSGHGGIEALFNGTPGIGVTRGNTGDLFIGPGLEELFEQISANSQQGPPPATRSSIDSMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCNHVYHSDCIVPWLIQHNTCPVCRQELPPQGLSSNRTSNGRSRSSISSSANGRVSSSRENRGRRNPLSFLWPFRSSSSSSNGATGSSSPASTIPENSHHSGYSGWPFE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1551 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 308 - -
Lal13g1551 311 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Lal13g1551 311 Pfam Ring finger domain 185 227 IPR001841 -
Lal13g1551 311 SMART ring_2 186 226 IPR001841 -
Lal13g1551 311 SUPERFAMILY RING/U-box 166 233 - -
Lal13g1551 311 MobiDBLite consensus disorder prediction 232 311 - -
Lal13g1551 311 CDD RING-H2_RNF126_like 186 227 - -
Lal13g1551 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Lal13g1551 311 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Lal13g1551 311 MobiDBLite consensus disorder prediction 273 302 - -
Lal13g1551 311 MobiDBLite consensus disorder prediction 232 259 - -
Lal13g1551 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1551 Lal-Chr13 15271326 15272261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1551 132 277 C3H Transcription Factor Family AT1G68180 37.671 3.54e-27 104