Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1546 ATGGAAATAGAAACCTCATGCTCTTCATTATCACTCTTTGTTTCTTCTATCATCTTTCTCCTAACAATATTCCAACAAATATGCTGTGATGCTAAGCATCACCAACCATGTCCTTCTTCTTCCTGCGCCAAAGTCACCAATATTACTTATCCCTTTCGCCTCAAATCCTACCCAAAGCACTGTGGCGACAAAAGATTGGAATTAGATTGCGACAAAAACGGGACCGTATTAACTTTCTTATCAGGAAAGTATTACGTTAACAACATAAATTACAGCACATACACAATGAGTTTGAGTGATGCAGGTGTAGTGGAAGATGCAACTTGCTCCTTTATACCTCGCTATTATTTAGACAACAATTTCATTACCGTGTCTGATATTTTTTATCAAGATTCTTTGCGCCAAAATTATTCAACAATTGCATACTTAAATTGTACAAATCCGGTGAAGAATGATCGACGATATGTGAAAGTGAATATGAGTCATAGTTGTGGGTTTGGAGGACACGTGTATGCAGTTTGGGATCAAGAGATAGATTATTTGAAACCGATAATAACGAAGAGTGATATTAAGGTTGGGTGTGGTTTGATGGTGGCAACATCGACAAGTAAAAGGTTGTCAGGTGTTGAATTAAAGGGTGAGATATCATATGGTGAAATTCATAAATGGATGGTTGAGGGATTTGAAGTGTTCTGGTTCCCTGTGATTTGTGATCAAATATGTGTAAGCAAGGATTTTGGATGTGAGCTGAATAGAAGTGGAGAAGTCCAATGTTACAAGAAATCATGTTATTGGGACTACACTCCCACCGGCAAGTGTGGAATTGTCGAATGGATCAGTGATTACCTTAAAGCTTATCTGAATGGCCTTATAGTTGTACTTGTGCTTCTTTTATTGATCTATAAATGGCGAAGAAGACATTTATCAATGTATGAAGAGATTGAAAACTTTTTGCTAGACAACAATCTAAGTCCCATTAGGTATGAATACAAAGAAATCAAGAAGATGAGTGGAAGTTTCAAAGTGAAATTAGGTCAAGGAGGCTATGGTTCAGTATATAAAGGAAAACTACGAAGTGGTCCTGATGTAGCAATAAAGATGTTGAATAATAAATTCAATTCTAATGGACAAGACTTTATTAATGAAGTTGCTACCATTGGAAGAATACATCATGTTAATGTGGTACGTCTTGTTGGATATTGTGTTGATGGAACAAAACGTGCCCTAGTCTATGAATTCATGCCTAATGGATCATTGGATAAATACATATTCTCTAATGAAGGAAGATTTATGTGA 1296 0.3619 MEIETSCSSLSLFVSSIIFLLTIFQQICCDAKHHQPCPSSSCAKVTNITYPFRLKSYPKHCGDKRLELDCDKNGTVLTFLSGKYYVNNINYSTYTMSLSDAGVVEDATCSFIPRYYLDNNFITVSDIFYQDSLRQNYSTIAYLNCTNPVKNDRRYVKVNMSHSCGFGGHVYAVWDQEIDYLKPIITKSDIKVGCGLMVATSTSKRLSGVELKGEISYGEIHKWMVEGFEVFWFPVICDQICVSKDFGCELNRSGEVQCYKKSCYWDYTPTGKCGIVEWISDYLKAYLNGLIVVLVLLLLIYKWRRRHLSMYEEIENFLLDNNLSPIRYEYKEIKKMSGSFKVKLGQGGYGSVYKGKLRSGPDVAIKMLNNKFNSNGQDFINEVATIGRIHHVNVVRLVGYCVDGTKRALVYEFMPNGSLDKYIFSNEGRFM 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1546 431 ProSiteProfiles Protein kinase domain profile. 338 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1546 431 Pfam Protein tyrosine and serine/threonine kinase 340 426 IPR001245 GO:0004672|GO:0006468
Lal13g1546 431 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 292 429 - -
Lal13g1546 431 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 12 294 - -
Lal13g1546 431 SUPERFAMILY Protein kinase-like (PK-like) 325 425 IPR011009 -
Lal13g1546 431 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Lal13g1546 431 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Lal13g1546 431 PANTHER RUST RESISTANCE KINASE LR10-RELATED 292 429 IPR045874 GO:0004672
Lal13g1546 431 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 294 IPR045874 GO:0004672
Lal13g1546 431 Gene3D Phosphorylase Kinase; domain 1 315 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1546 Lal-Chr13 15241760 15253446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1546 16 423 Receptor kinase-like Gene Family AT5G38260 28.941 1.33e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lal13g1546 PK_Tyr_Ser-Thr 1.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1546 - - gmx:100820366 423.705