Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1544 ATGGGAATCTGCAATGGAAAACCTATTGAGACCAAACAAATCAATGTTGGAGAAAACAACACAGACAAAGATGTTCTACCAAGTTCCAACAAAACCAAATCATCCTCAAAGTTCCCATTCTATAGCCCAAGCCCTTTGCCAAGTTGGTTCAAGAACTCACCATCAAACTCAAACTCAAACTCCAACAACAATAGTGTTAGTTCAACTCCAACACCTTTGAGAATCTTCAAGCGCCCTTTCCCTCCTCCTTCCCCAGCAAAGCACATTCGGGCATTGCTCGCTCGGCGCCACGGTTCTGTGAAGCCGAATGAGGCATCAATCCCTGAAGGAAGTGAGTGTGAGGTTGTTGGGTTGGATAAGAGTTTTGGATTCTCAAAGCAATTTTTAGTGAATTATGAACTTGGTGAGGAAATTGGGCGTGGCCATTTTGGCTATACTTGCTCTGCAATAGGGAAAAAGGGTACTTTGAAGGGACTGAATGTTGCTGTCAAAATCATTCCAAAATCAAAGATTGTTTCTATGGGAAAATGGCATTACATAAGTTTTGTGGGAATGACCTTCTTGGCATACATTCCTAGTTTCTTTGAGGATTTACATGCCTTTTGTTCTTTGCGTAGAATCAGTAGTTGCTCTTTTGTTCTTACGAAAATCAGTGATGATTGGCAGTTGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCGTGCTCTTACAGTACATAAGAATTTGGTGCAATTCTATGAAGCCTATGAAGATGATGACAATGTTTTTATAGTTATGGAAAATTGGAAGTTGTTAAGTGAATTCAACAAAACAAGAGCTTACATTGTAGTGCTATTCAGGTTATGCAAAGGAGGTGAACTTCTGGATAGGATTCTTTCCAGTTGCTGTCGCGATTGCGGTAACGGTTGCTGCTACTGCGATTGCGGTCATTGCGACACGGATTGCGGTCGTTGCGGTGTGAATTACTTTGTTATTGAAACAATATTTTTGAATCTGTCTAATGCTGTCCGATGCAGTCCAGTGCGATCCAATGCGGTTGTGTTGCGCCTCGATGTGGCCGCATCATTGGGTGGAAAGTACCCAGAAGAGGATGCCAAAGTTGTTATCATCCAAATATTAAGCGCGGTAGCTTTTTGTCATCTTCAGGGTGTTGTTCATCGTGATCTCAAGCCAGAGAATTTTCTTTTTGATTCAAAGGATGAAAATTCGACATCGTTGAAGGTCATTGATTTTGGATTGTCTGACTATGTAAAGCCAGATGAGAGATTGAATGATATTGTGGGTAGTGCATATTATGTAGCTCCAGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTTATTGCTTACATTCTATTATGCGGAAGTCGTCCATTTTGGGCTCGAACAGAATCCGGCATATTTCGCGCTGTCCTGAAGGCAGAACCAAGTTTTGATGAAACTCCTTGGCCTTCTTTATCAGCTGATGCAATAGATTTTGTAAAGACGCTGTTGAATAAGGATTATCGGAAAAGATTAACTGCTGCTCAAGCTCTCAGTCATCCGTGGCTGATGAATTATCGCGATGATATGAAGATACCTTTGGATATGATAGTTCACAAGCTTGTTAAAGCTTACATATGCTCATCTTCATTACGTAAATCAGCATTACGGGCACTTGCAAAGACAATAACAGTAACTCAGGTAGCTTATCTCAGAGATCAATTTACTATGTTAGGGCCAAACAAAAATGGGTTTATCTCTATGCAGAACTTTAAGACGGCTGTTTGGAGGAGCTCCACCGAAGCTTCAAATGATTCCCGGGTCTTAGATTACGCGAATTCGGTTTGTTCTATCCAATATAGGCATTTAGATTTTGAGGAATTCTGTGCTGCTGCTATAAGTGTGCACCAACTAGAGGGACTAGGAAGCTGGGAGCAACATGCAAGGCGCGCATATGAGCTTTTCGAAAAGGATGGGAATAGACCGATTATGATTGAAGAGCTTGCCTCGGAACTTGGGCTTAGTCCTTCAGTACCTGTTCATGTGGTACTTCAAGATTGGATAAGTCACCCAGATGGAAAGCTTAGTTTCATGGGGTTTGTCAAACTTCTGCATGGAATTTCTTCTCACACATTTCAGAAGCCTTGA 2166 0.4141 MGICNGKPIETKQINVGENNTDKDVLPSSNKTKSSSKFPFYSPSPLPSWFKNSPSNSNSNSNNNSVSSTPTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVVGLDKSFGFSKQFLVNYELGEEIGRGHFGYTCSAIGKKGTLKGLNVAVKIIPKSKIVSMGKWHYISFVGMTFLAYIPSFFEDLHAFCSLRRISSCSFVLTKISDDWQLTTAIAIEDVRREVKILRALTVHKNLVQFYEAYEDDDNVFIVMENWKLLSEFNKTRAYIVVLFRLCKGGELLDRILSSCCRDCGNGCCYCDCGHCDTDCGRCGVNYFVIETIFLNLSNAVRCSPVRSNAVVLRLDVAASLGGKYPEEDAKVVIIQILSAVAFCHLQGVVHRDLKPENFLFDSKDENSTSLKVIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKAEPSFDETPWPSLSADAIDFVKTLLNKDYRKRLTAAQALSHPWLMNYRDDMKIPLDMIVHKLVKAYICSSSLRKSALRALAKTITVTQVAYLRDQFTMLGPNKNGFISMQNFKTAVWRSSTEASNDSRVLDYANSVCSIQYRHLDFEEFCAAAISVHQLEGLGSWEQHARRAYELFEKDGNRPIMIEELASELGLSPSVPVHVVLQDWISHPDGKLSFMGFVKLLHGISSHTFQKP 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1544 721 Gene3D Transferase(Phosphotransferase) domain 1 356 549 - -
Lal13g1544 721 MobiDBLite consensus disorder prediction 12 72 - -
Lal13g1544 721 Gene3D - 550 639 - -
Lal13g1544 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
Lal13g1544 721 ProSitePatterns Protein kinases ATP-binding region signature. 138 164 IPR017441 GO:0005524
Lal13g1544 721 Pfam Protein kinase domain 364 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1544 721 Gene3D - 555 709 - -
Lal13g1544 721 CDD STKc_CAMK 131 528 - -
Lal13g1544 721 ProSiteProfiles Protein kinase domain profile. 132 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1544 721 Gene3D Phosphorylase Kinase; domain 1 202 269 - -
Lal13g1544 721 SUPERFAMILY EF-hand 560 714 IPR011992 -
Lal13g1544 721 MobiDBLite consensus disorder prediction 1 80 - -
Lal13g1544 721 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 171 - -
Lal13g1544 721 PANTHER SERINE/THREONINE-PROTEIN KINASE 359 715 - -
Lal13g1544 721 PANTHER SERINE/THREONINE-PROTEIN KINASE 220 300 - -
Lal13g1544 721 SMART serkin_6 132 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1544 721 Gene3D Phosphorylase Kinase; domain 1 114 178 - -
Lal13g1544 721 SUPERFAMILY Protein kinase-like (PK-like) 131 558 IPR011009 -
Lal13g1544 721 PANTHER CDPK-RELATED KINASE 7 359 715 - -
Lal13g1544 721 PANTHER CDPK-RELATED KINASE 7 52 171 - -
Lal13g1544 721 PANTHER CDPK-RELATED KINASE 7 220 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1544 Lal-Chr13 15226104 15232829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1544 19 719 EF-hand Containing Proteins AT3G50530 52.273 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal13g1544 Pkinase 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1544 - - gmx:100783262 631.328