Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1542 ATGAAGATGAATCTTGGGTCACTGGATCAGTGGAGAAGTTACTTTAGAACTGCAAATTCTGATATATTTGATATCATTAATCATGCAATTATGGTGGCTGCTTCTGATTGCCCCAAAGAATTCAGGTTAAGGAGGGATGAGATTGCACAAAAGTTATTCTCTTGCAGATTCATTCACTGTATGGGTTGTGACAAAATTGAACTTTCTGTGTCTGTTGATGATAAAGAGAAAGATGAGAGTGGTTGCAAGAATTGTTTTGAGAGTGATGATGATGTTGCTGTGTTTGAATATGAAGCAGGAGCAAGTAAAGAGAGCAAGGTCAATAGTAGTGGAAATGATCATAGAGAGATGAACATGAACCAAGTTAGTAATTATAGCTTTGAGGAAGCTGAGGCATTGACTAATGAGATTGAAGAAGAATCCCAGTATCATGAGGAGGTGTTGAGGATCAAGGAAATTATGCTTAACTTTGAAGAAGAGTCTGATAAAGTGTTATTTGAGTCATTAAGGAGGCTCCAGCTCATGGAACTCACTGTGGATCTTCTCAAGGTTACTGAGATTGGGAAGGCTGTTAATCCTCTCCGAAAGCATGGATCAAGAGATATTCGTCAACTTACACGGACACTTATTGATGGATGGAAAGTAATGGTGGATGAATGGGTCAAAGCTACCACACCTATTGCAGGTTCAGAAGGAACTCCAGATTCAATAAATCCATCTGTTATTGATGAAGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGCTTTCTTTGCAGCTCAAACTGGTTCTATGGAACTCTCACAGTTCTTCGATGGCATGGATGATGATTTAAATCCTCAACAAAGTCGAGAATTCATCAAGAACCGTGATAATGGTAGACGACCATCTTTGGACAGTCAAAATATGGCAAAGAGGAAACCTCAGGCTTCCAATGAGGCAATCATCATTGGCAAGGATAGTAAGACTCGGCAAACAAAGAAAAATGGAACTTTTGTTCGGCTAAATAAACCGGCAGGTGCTGATTCTGGTCCTGGCAGACCACCAAAATCAACCGTGCAGAAAAAAAGCAATACGGAGCGCAAAATGCAACCGAAAATAGAAAAGACGGATGTCCAAAAAAACCATCAAATTCAGCAAGATAAATTCAAGTGTTCGGATGATGCCGCAGTCCAAGTGAAGTTAGAAGCGACCAAAAGGAAACTTCAGGAGCGGTATCAACAAGCTGAAAATGCTAAGAGGCAGCGAACCGTGCAGGTTATGGAATTGCATGACCTCCCCAAGCAAGCCGTTGGCCACCGAAAACCACATCTCAAACCAGGAAATCAGAAGAGGCAATGGGCTCATGGAAGAAGATAG 1359 0.4128 MKMNLGSLDQWRSYFRTANSDIFDIINHAIMVAASDCPKEFRLRRDEIAQKLFSCRFIHCMGCDKIELSVSVDDKEKDESGCKNCFESDDDVAVFEYEAGASKESKVNSSGNDHREMNMNQVSNYSFEEAEALTNEIEEESQYHEEVLRIKEIMLNFEEESDKVLFESLRRLQLMELTVDLLKVTEIGKAVNPLRKHGSRDIRQLTRTLIDGWKVMVDEWVKATTPIAGSEGTPDSINPSVIDEEEGLPSPPMDEAFFAAQTGSMELSQFFDGMDDDLNPQQSREFIKNRDNGRRPSLDSQNMAKRKPQASNEAIIIGKDSKTRQTKKNGTFVRLNKPAGADSGPGRPPKSTVQKKSNTERKMQPKIEKTDVQKNHQIQQDKFKCSDDAAVQVKLEATKRKLQERYQQAENAKRQRTVQVMELHDLPKQAVGHRKPHLKPGNQKRQWAHGRR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1542 452 SMART TFS2_5 147 219 IPR003617 GO:0005634
Lal13g1542 452 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 451 IPR044805 -
Lal13g1542 452 MobiDBLite consensus disorder prediction 226 252 - -
Lal13g1542 452 MobiDBLite consensus disorder prediction 285 379 - -
Lal13g1542 452 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 451 - -
Lal13g1542 452 CDD TFIIS_I 145 218 - -
Lal13g1542 452 MobiDBLite consensus disorder prediction 354 379 - -
Lal13g1542 452 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 143 231 IPR035441 -
Lal13g1542 452 Pfam TFIIS helical bundle-like domain 169 217 IPR017923 -
Lal13g1542 452 Coils Coil 392 419 - -
Lal13g1542 452 MobiDBLite consensus disorder prediction 433 452 - -
Lal13g1542 452 MobiDBLite consensus disorder prediction 428 452 - -
Lal13g1542 452 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 135 228 IPR035441 -
Lal13g1542 452 ProSiteProfiles TFIIS N-terminal domain profile. 145 220 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1542 Lal-Chr13 15186703 15190264 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal13g1542 Med26 5.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1542 - - gmx:100775579 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1542 13 15186703 15190264 Lal13g1542 13 15186703 15190264 ECH