Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1539 ATGGCTAACATCAACAAAAACAAGGAGAGAGACCTTGAGTTTATCTTTGATGAGAACAATGAAGATGTGAATGAATGTGAGGATCATGATATTGAGGATGTGAAGTTTGAGAGTGAGAATAGCAGTGAAGTTGATAGTGATGATGGTGAAGGAAATAATGAAACAAAGCCAGAGTCTTTTACTTCTCAGCAATGGCCTCAAAGTTACAAAGAGACTACAGATTCTTACACAATTGCTACAGCTCCAAATTTCGAATCAATTTTGCGCGGACCTAGTTTTGTTTATTCTAGTTTTCTTAATCGTTCAAAGAGTTACATAGAGATAGATGGAAAGACTCCTTTACTGTCCGGTCAGGAAGGCATTAATCAATCAACATGGTGGGAGAAAGCTTCAATGCAAAGGCTTGTTTCTGAAGAATTGCCCATTGGTTATGGATGCAGCTTCACTCAAACAGTTTTCAATGGGATCAATGTGATGTGTGGAGTTGGCCTTCTGTCCACTCCTTATACAGTGAACCAAGCTGGTTGGGCAAGTATGGCTGTGATGCTACTTTTTGCAGTTATTTGTTGTTATACAGCCACCCTTATGAAAGACTGCTTTGAAAGCAGAGAAGGAATCGTTAGCTACCCAGATATCGGAGAAGCTGCATTTGGAAAATACGGCCGTATTTTTGCATCAATCATTTTGTACACCGAATTATATACATATTGTGTGGAATTCATCATCTTGGAAGGAGATAACCTCACTAGTGTTTTTCCTGGAACGTCGTTGAATTTTGGTAGTTTCAAGTTAGACTCTGTGCACTTGTTTGGGATTATAACTGCACTTATTGTTCTCCCTACTGTTTGGTTGAAAGATATCCGCATAATCTCGTACCTATCAGCTGGAGGGGTTATTGCAACACTTTTGATTGTTATCTGTGTGATTAGTGTTGGGACAATAGGTGGTGTTGGATTCCATCACACTGGTCAAGTGGTGAATATGAGTGGCATCCCATTTGTTATTGGTATTTATGGATTTTGCTATGCAGGACACTCAGTTTTTCCAAATATTTACCAGTCTATGGCTGATAAAAGACAATTTACCAAGGCAGTAATAACATGTTTTGTTTTGTGCATTTTGATATATGGAGGTGTTGCAATCATGGGATTTCTGATGTTTGGGGATGCAACTCTGTCTCAGATAACATTGAATATGCCAGCAGGTTCATTTGCTTCCAAAGTTGCATTGTGGACAACAGTAAGGCTTGTGATGGCTTTGATTGGCTCTCTCTTCAGTATACTTGTGTCGGTGATAATGCCAAGTTTATGTTTTCTGAAAATTGTGGGTAGAAAAGCTACAAATACACAGCTGCAGTCTAGGCCTGCTTTAGTCATAGAGTGGGTAGTCAGGTGTGAGGTGCAGGCGGCATGTAGCAAGTGTCGACAACAAAGGCCTTGTTGGCATAAGTCTTCATCAGGGTACTGGGCTCGACCAGCCTTAAGTAATCCAGTCTGGTCAATGGTCACACTGAGCATCGTAATTGCTATATTTGGAATCATATGTGGAGTCCTTGGAACATATTCCTCTGTGTTAAATATTGTCAGTAGTTACTAA 1596 0.3997 MANINKNKERDLEFIFDENNEDVNECEDHDIEDVKFESENSSEVDSDDGEGNNETKPESFTSQQWPQSYKETTDSYTIATAPNFESILRGPSFVYSSFLNRSKSYIEIDGKTPLLSGQEGINQSTWWEKASMQRLVSEELPIGYGCSFTQTVFNGINVMCGVGLLSTPYTVNQAGWASMAVMLLFAVICCYTATLMKDCFESREGIVSYPDIGEAAFGKYGRIFASIILYTELYTYCVEFIILEGDNLTSVFPGTSLNFGSFKLDSVHLFGIITALIVLPTVWLKDIRIISYLSAGGVIATLLIVICVISVGTIGGVGFHHTGQVVNMSGIPFVIGIYGFCYAGHSVFPNIYQSMADKRQFTKAVITCFVLCILIYGGVAIMGFLMFGDATLSQITLNMPAGSFASKVALWTTVRLVMALIGSLFSILVSVIMPSLCFLKIVGRKATNTQLQSRPALVIEWVVRCEVQAACSKCRQQRPCWHKSSSGYWARPALSNPVWSMVTLSIVIAIFGIICGVLGTYSSVLNIVSSY 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1539 531 PANTHER OS05G0424000 PROTEIN-RELATED 416 465 - -
Lal13g1539 531 PANTHER OS05G0424000 PROTEIN-RELATED 39 414 - -
Lal13g1539 531 PANTHER AMINO ACID TRANSPORTER AVT1A 416 465 - -
Lal13g1539 531 PANTHER AMINO ACID TRANSPORTER AVT1A 39 414 - -
Lal13g1539 531 Gene3D Amino acid/polyamine transporter I 145 461 - -
Lal13g1539 531 MobiDBLite consensus disorder prediction 55 71 - -
Lal13g1539 531 MobiDBLite consensus disorder prediction 1 17 - -
Lal13g1539 531 MobiDBLite consensus disorder prediction 1 71 - -
Lal13g1539 531 Pfam Transmembrane amino acid transporter protein 147 525 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1539 Lal-Chr13 15162227 15171784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1539 39 414 Amino Acid or Auxin Permease AAAP Family AT2G41190 66.752 1.69e-180 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1539 K15015 - gmx:100790344 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1539 13 15162227 15171784 Lal13g1539 13 15162227 15171784 ECH