Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1529 ATGTCCCTAGAAGAGTCACTAAGATCTCTTTCTCTTGACTACCTAAACCTTCTCATCAATGGCCAAGCCTTCAGCGACATAACCTTCCAAGTAGAAGGCCGTTTGGTCCATGCTCATCGCTGCATCTTGGCAGCAAGAAGCCTTTTCTTCAGGAAATTCTTCTGCGGTCCAGACCCGACATCGGGCCTGGACCAAGCAGAAGGACCCTCTCAGGTCAACTCTGCAGGTACCAGGACAACGCCCAGATTACCGGACGTTGTCCCAGTGAACTCTGTGGGATATGAAGTGTTCTTGTTGCTCCTCCAGTTTCTGTACAGTGGACAAGTCTCTATTGTGCCTCAGAAGCATGAGCCAAGGCCTAATTGTGGGGAGAGAGGATGCTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCCCTTGACACTCTTGCTGCGTCTAGATACTTTGGCGTTGAACAGTTGGCATTGCTCACTCAGAAACAACTATCCAGCATGGTAGAAAAAGCCTCAATTGATGATGTGATGAAAGTGCTCCTAGCTTCAAGAAAGCAAGAAATGCACCAACTATGGACAACTTGTTCCCACCTTGTTGCCAAGTCAGGCCTTCCCCCTGAAATCATTGCCAAGCATCTCCCCATTGATGTCGTCGCCAAGATTGAAGAGCTTCGTTTCAAATCCTCCCTCGCCCGCCGGTCATTAACGCCGCTACACCACCACCACCACCATGACACGGCGGCCGAGGTTGAAGACCAAAAAATCAGGCGAATGAGGAGGGCCCTCGACTCGTCCGATGTGGAACTAGTGAAGCTCATGGTAATGGGAGAAGGACTAAACCTTGATGAAGCTTTGGCCTTAAACTATGCGGTGGAGAATTGCAGCAGGGAAGTAGTGAAGGCTTTGCTTGAGCTTGGTGCAGCAGATGTCAACTACCCAGCCAGGCCGTCAGCGAAAACACCGCTCCATGTCGCGGCAGAGATGGTGTCGCCGGACATGGTGGCGGTGTTGCTAGACCACCATGCTGACCCTAATGTTAGAACTGTGGATGGTATAACTCCTCTTGATATCCTTAGAACCCTAACCTCTGATTTCCTCTTCAAAGGTGCTCTCCCTGGATTAACACACATTGAACCTAACAAGCTTAGGTTATGTTTGGAACTTGTTCAATCTGCAGCACTTGTTCTTTCACGTGAAGAAGGCAATGCTAACCCTCCTTCACCTACAGCCATATACCCACCAATGAGTGAAGATCATAGCAGCAATAGCAGCAACAACAACAACATTGCTAACCTCAACTTGGACTCTAGGTTGGTATTTCTCAACCTTGGTGCCACCCATATCGGTGTTGGTGATGACGATGGTGTTGGTGATGATGATGATAATAATCATAATAACCGTCATGGATCACAAGGTGGTGGATGTGATTCAACAATGTATCATCACCACCACTCTCATAACTACTAG 1461 0.4873 MSLEESLRSLSLDYLNLLINGQAFSDITFQVEGRLVHAHRCILAARSLFFRKFFCGPDPTSGLDQAEGPSQVNSAGTRTTPRLPDVVPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAASRYFGVEQLALLTQKQLSSMVEKASIDDVMKVLLASRKQEMHQLWTTCSHLVAKSGLPPEIIAKHLPIDVVAKIEELRFKSSLARRSLTPLHHHHHHDTAAEVEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALNYAVENCSREVVKALLELGAADVNYPARPSAKTPLHVAAEMVSPDMVAVLLDHHADPNVRTVDGITPLDILRTLTSDFLFKGALPGLTHIEPNKLRLCLELVQSAALVLSREEGNANPPSPTAIYPPMSEDHSSNSSNNNNIANLNLDSRLVFLNLGATHIGVGDDDGVGDDDDNNHNNRHGSQGGGCDSTMYHHHHSHNY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1529 486 Pfam Ankyrin repeats (3 copies) 263 345 IPR002110 GO:0005515
Lal13g1529 486 Gene3D Potassium Channel Kv1.1; Chain A 3 199 IPR011333 -
Lal13g1529 486 ProSiteProfiles Ankyrin repeat region circular profile. 315 345 - -
Lal13g1529 486 CDD BTB_POZ_NPR_plant 8 166 - -
Lal13g1529 486 Pfam Domain of unknown function (DUF3420) 201 257 IPR024228 -
Lal13g1529 486 SUPERFAMILY Ankyrin repeat 273 358 IPR036770 -
Lal13g1529 486 Pfam BTB/POZ domain 16 114 IPR000210 GO:0005515
Lal13g1529 486 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 482 IPR044284 GO:0099402
Lal13g1529 486 SMART ANK_2a 280 310 IPR002110 GO:0005515
Lal13g1529 486 SMART ANK_2a 315 344 IPR002110 GO:0005515
Lal13g1529 486 SMART BTB_4 25 166 IPR000210 GO:0005515
Lal13g1529 486 MobiDBLite consensus disorder prediction 397 426 - -
Lal13g1529 486 PANTHER REGULATORY PROTEIN NPR5 1 482 - -
Lal13g1529 486 SUPERFAMILY POZ domain 9 164 IPR011333 -
Lal13g1529 486 ProSiteProfiles BTB domain profile. 25 113 IPR000210 GO:0005515
Lal13g1529 486 MobiDBLite consensus disorder prediction 452 486 - -
Lal13g1529 486 ProSiteProfiles Ankyrin repeat profile. 315 347 IPR002110 GO:0005515
Lal13g1529 486 Gene3D - 242 363 IPR036770 -
Lal13g1529 486 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1529 Lal-Chr13 15044299 15047885 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal13g1529 BTB 6.9e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1529 K14508 - zju:107433767 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1529 13 15044299 15047885 Lal13g1529 13 15044299 15047885 ECH
Lal12g1284 12 15724186 15727565 Lal13g1529 13 15044299 15047885 LSH