Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1519 ATGGGTAATTGTTGTGCAACACCTTCTTTTTATAATAAACATAAAAAGAATAAGAAACGAAACCCGTTCGACGATGGAATGAGCAATAACAAGCTTGTGGTATTGAAGGAACCTACGGGGCGTGAGATCGACGCGCGTTACGAGTTAGGTGACGAGCTTGGTAGAGGTGAATTCGGGGTAACGTATTTGTGCATTGATAAGGAAAGTCATGAGCAATTTGCATGCAAATCAATTTCGAAGAAGAAATTGAAAACCGCTATTGATATTGAAGATGTGAGGAGGGAAGTGGAGATAATGAAGCACATGCCTAAGCATCCGAATATTGTGTCTTTGAAAGATACTTATGAGGATGATAATGCTGTTCATCTTGTTATGGAACTTTGTGAAGGTGGAGAGCTTTTTGATCGTATTGTTGCTCGGGGACATTATACGGAGCGTGCTGCTGCTGTTGTAACCAGAACTATTGTCGAAGTAGTTCAGGTGAGCTCAAATTTTGTGTGGATGGTTCAACATGATGATTATGGAATGGTGATGTGCCACAAACATGGTGTGATGCATAGGGATCTCAAACCTGAGAACTTTTTGTTCGGAAACAAGAAGGAAACATCACCTTTGAAGGCTATTGATTTCGGATTGTCAATTTTCTTTAAACCAGGTGAAAAGTTTAACGAAATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGCGAAATTATGGCCCTGAAGTAGATATCTGGAGTGCTGGAGTGATTCTTTATATCTTACTTTGTGGTGTCCCACCTTTTTGGGCAGAAACTGAACAAGGAGTTGCTCAAGCAATCATAAGATCTGTTGTTGATTTTAAAAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGATCCAAAGACCAGGCTGTCTGCTCAGGAAGTGTTAGATCATCCATGGTTACAAAATGCGAAGAAAGCTCCTAATGTTTCATTAGGAGAAACTGTTAAAGCTAGGCTCATGCAATTTTCTGTAATGAATAAGCTGAAGAAAAGAGCTTTGAGGGTGATTGCAGAGCATTTGTCAGTGGAAGAAGTTGCTGGAATAAAAGAGGGATTCGAGCTGATGGATACAAGCAATACGGGCAAGATTAACGTCGATGAACTACGAGTAGGGTTGCACAAGCTAGGCCACCATATTTCTGACTCAGATGTCCAAATGCTTATGGAATCTGGTGATGCAGACAAAGATGGGTACCTAGATTATGGAGAGTTTGTTGCCATTTCTGTTCATCTGAGAAAGATAGGAAATGACGAGCATCTTCACAAAGCCTTTCAATTTTTTGATCAGAACCAAAGTGGGTATATTGAAATTGAGGAGCTACATAATGCCTTAGTTGATGAAATTGACACAAACAGTGAAGAAGTCGTTACTGCAATTATGCATGATGTGGACACGGATAAGGATGGAAGAATTAGTTATGAGGAATTCGCTGCAATGATGAAGGCTGGCACAGACTGGAGAAAAGCATCAAAGCAGTATTCGCGAGAGAGATTTACAAGCCTAAGTTTGAAATTGATGAAGGATGGGTCATTGCAATCAAACAATGACCACTAG 1620 0.4037 MGNCCATPSFYNKHKKNKKRNPFDDGMSNNKLVVLKEPTGREIDARYELGDELGRGEFGVTYLCIDKESHEQFACKSISKKKLKTAIDIEDVRREVEIMKHMPKHPNIVSLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAVVTRTIVEVVQVSSNFVWMVQHDDYGMVMCHKHGVMHRDLKPENFLFGNKKETSPLKAIDFGLSIFFKPGEKFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKREPWPKVSDNAKDLVKKMLDPDPKTRLSAQEVLDHPWLQNAKKAPNVSLGETVKARLMQFSVMNKLKKRALRVIAEHLSVEEVAGIKEGFELMDTSNTGKINVDELRVGLHKLGHHISDSDVQMLMESGDADKDGYLDYGEFVAISVHLRKIGNDEHLHKAFQFFDQNQSGYIEIEELHNALVDEIDTNSEEVVTAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASKQYSRERFTSLSLKLMKDGSLQSNNDH 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1519 539 Pfam EF-hand domain pair 440 503 IPR002048 GO:0005509
Lal13g1519 539 Pfam EF-hand domain pair 370 429 IPR002048 GO:0005509
Lal13g1519 539 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Lal13g1519 539 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Lal13g1519 539 ProSiteProfiles EF-hand calcium-binding domain profile. 473 508 IPR002048 GO:0005509
Lal13g1519 539 Gene3D Phosphorylase Kinase; domain 1 49 132 - -
Lal13g1519 539 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Lal13g1519 539 SUPERFAMILY Protein kinase-like (PK-like) 46 330 IPR011009 -
Lal13g1519 539 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Lal13g1519 539 SMART efh_1 441 469 IPR002048 GO:0005509
Lal13g1519 539 SMART efh_1 369 397 IPR002048 GO:0005509
Lal13g1519 539 SMART efh_1 477 505 IPR002048 GO:0005509
Lal13g1519 539 SMART efh_1 405 433 IPR002048 GO:0005509
Lal13g1519 539 Pfam Protein kinase domain 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1519 539 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 13 519 - -
Lal13g1519 539 ProSiteProfiles Protein kinase domain profile. 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1519 539 CDD STKc_CAMK 46 321 - -
Lal13g1519 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Lal13g1519 539 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Lal13g1519 539 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1519 539 SUPERFAMILY EF-hand 346 514 IPR011992 -
Lal13g1519 539 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Lal13g1519 539 Gene3D - 331 506 - -
Lal13g1519 539 Gene3D Transferase(Phosphotransferase) domain 1 133 330 - -
Lal13g1519 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 519 - -
Lal13g1519 539 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1519 Lal-Chr13 14917876 14924831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1519 1 534 EF-hand Containing Proteins AT5G19450 76.330 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal13g1519 Pkinase 3.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1519 K13412 - gmx:100778471 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1332 11 16926597 16930720 Lal13g1519 13 14917876 14924831 PCT
Lal1g1695 1 19383361 19388620 Lal13g1519 13 14917876 14924831 PCT
Lal20g0254 20 1824480 1828761 Lal13g1519 13 14917876 14924831 PCT
Lal13g1519 13 14917876 14924831 Lal11g1332 11 16926597 16930720 PCT
Lal13g1519 13 14917876 14924831 Lal1g1695 1 19383361 19388620 PCT
Lal13g1519 13 14917876 14924831 Lal20g0254 20 1824480 1828761 PCT