Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1505 ATGATGCAAGGTTACCCCTTTTCCTTATCCAACACTCCTTCCATTGGAGGGTTTTCTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATCAACCTCCTCTCCCCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAGGTCATTGCTCTTTCTCCGAAGACCCTTATGGCCACTAACAGATTCATATGTGAAATATGTAACAAAGGGTTTCAGAGAGACCAGAATCTTCAACTTCATAGAAGGGGTCACAACCTACCATGGAAGCTACGTCAGAGGTCCAACAAGGAGGTGCGGAAGAAGGTCTACATCTGTCCGGAGAAGACCTGCGTCCACCACGATCCATCGAGGGCACTCGGCGACCTCACCGGTATAAAGAAGCACTTCAGCAGAAAGCATGGTGAGAAAAAGTGGAAGTGTGAGAAGTGTGCTAAGAAATATGCTGTTCAATCTGATTGGAAGGCTCACACTAAAACTTGTGGCACTAGAGAATACAAATGTGACTGTGGCACCCTCTTTTCCAGGAAAGACAGTTTCATTACCCACAGGGCTTTCTGCGATGCTTTAGCAGAAGAAAGTGCGAGGCTGACCTCAGTTACAACCTCAACAAATCTGAATTTCAAGAAAGAAGAAAGTTTTATGATGAACTCACAGCAAGGTTTGGCACATGGACTAATAGGTGGTGAAGGATCACTTCATCAAAATGTAGCTGGCATTCAACAATTTGTCCCACACGATTTTCAACTCCATTTTAATGGAATGGGAATGGGTGAAGATCAACAAAGACCAAGCTTGTCACTTTGGTTGAATCAAGGAAATCATCCTCATCAGATGAATAATAATAATACTAATAATAATAATAATAATAATAATAATAATAATCACAGTGATATGGGACACAACTCTGGTCTTTATGCATCTTCAGGTTTGCCTGAGATTATGCAAATGGCACATGCAAATAATAATGCATTGATTGGCTCAAATTCTTCTATGATGTCTAATTATGGAGTACCTGTTTCAAATTCAAGCACAGCAAATCTTTCCCTATCATCACTACCTATTGGGAAAAGGGTAGAAAGTAGTGGGAATTCAGATTTGGCATCTATATACTCTGATAGTCAAAACAAGCAATCAAGTAAGCCAGCTTCACCTATGTCAGCCACTGCACTTCTTCAAAAAGCAGCTCAAATGGGTTCCATCAGAAGTAACACCAACCCTTCAATTTTCAATGGCAGTTTTGGAGTAATGACCTCTTCTTCCTCCCAACAAGAGAATTTTGCTTCAACTAGCAGTGCTGTAGCCATGTTGGGAAATGCTGCTAATATTAGCTCATTGAATCATTCATCAAACAGTTTTGACCAGCTTATGATGCAAACCAACCAAAGTGAGCCAATGAAATTGAAGATTCTTTCTGGTACAACCTCTGCTGAGCATAATTTGACAAGAGATTTTCTTGGTGTGAGTGGAGGAGGAGCTGGTCCTCAATTTTTACCTCATGAGCTAGCAAAGTTTGCTTCATTAGGCTCACCAATGGGGTTAACCCAATTCACAGGCAATCACTGA 1575 0.4121 MMQGYPFSLSNTPSIGGFSQEQNTNPNPKPNQPPLPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCAKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTSTNLNFKKEESFMMNSQQGLAHGLIGGEGSLHQNVAGIQQFVPHDFQLHFNGMGMGEDQQRPSLSLWLNQGNHPHQMNNNNTNNNNNNNNNNNHSDMGHNSGLYASSGLPEIMQMAHANNNALIGSNSSMMSNYGVPVSNSSTANLSLSSLPIGKRVESSGNSDLASIYSDSQNKQSSKPASPMSATALLQKAAQMGSIRSNTNPSIFNGSFGVMTSSSSQQENFASTSSAVAMLGNAANISSLNHSSNSFDQLMMQTNQSEPMKLKILSGTTSAEHNLTRDFLGVSGGGAGPQFLPHELAKFASLGSPMGLTQFTGNH 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1505 524 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lal13g1505 524 Coils Coil 522 524 - -
Lal13g1505 524 MobiDBLite consensus disorder prediction 271 310 - -
Lal13g1505 524 MobiDBLite consensus disorder prediction 271 307 - -
Lal13g1505 524 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Lal13g1505 524 MobiDBLite consensus disorder prediction 364 394 - -
Lal13g1505 524 MobiDBLite consensus disorder prediction 1 50 - -
Lal13g1505 524 Gene3D Classic Zinc Finger 44 115 - -
Lal13g1505 524 Gene3D Classic Zinc Finger 116 199 - -
Lal13g1505 524 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Lal13g1505 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Lal13g1505 524 MobiDBLite consensus disorder prediction 27 41 - -
Lal13g1505 524 MobiDBLite consensus disorder prediction 1 26 - -
Lal13g1505 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 512 - -
Lal13g1505 524 SMART c2h2final6 66 88 IPR013087 -
Lal13g1505 524 SMART c2h2final6 107 137 IPR013087 -
Lal13g1505 524 SMART c2h2final6 142 162 IPR013087 -
Lal13g1505 524 PANTHER ZINC FINGER PROTEIN JACKDAW 7 512 IPR033243 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1505 Lal-Chr13 14726337 14729872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1505 6 428 IDZ Gene Family AT5G66730 47.727 3.07e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal13g1505 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1505 K25870 - gmx:100801182 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1505 13 14726337 14729872 Lal13g1505 13 14726337 14729872 ECH